Osgeolive-jupyter
Python Libraries Strategy
Fresh priority python3 for the Jupyter Notebooks of 2023
- GeoPandas (and pySAL) :
gpd 0.12
direct link to GEOS 3.11, popular extension to Pandas data science; please recall that pySAL is merging into the GeoPandas project overall; GeoPandas+pySAL use matplotlib graphics base, prefers Folium for web maps (?)
- Numpy & Pandas :
np 1.21.5
,pd 1.3.5
fundamental packages
- PostGIS writing done with pyscopg2
2.9.2
(low-level) or geoalchemy20.10.2
(ORM based on sqlalchemy)
- rasterio : modern geoTIFF handling; sophisticated library design; not easy to build from source
1.3.4
- Shapely & Fiona : direct link to libGEOS/ogr from python; example Notebooks in place
Shapely-1.8.5
Fiona-1.8.22
- opendatacube core and Notebook client examples v1.8.7 -LINK- odc-geo a minimal Opendatacube setup (see below)
- pySTAC spatial-temporal analysis standard; opendatacube collaborators v1.4 -LINK- updt v1.6
- stactools is a collection of interfaces and utilities, TBD from odc soon -LINK-
- fsspec -LINK-
- geopython OWSLib, pygeoapi, pygeometa v0.9.1, others .. All -LINK-
- Scikit-Learn : original machine-learning library by international research team led by French math; stands the tests of time; integrated with SciPy for Fortran, BLAS, LAPACK libs; numpy for data allocation; important primitives like PCA, SVM, and KNN are optimized in practical ways, and then benchmarked against pure Fortran or C++ for comparison
0.23.2
- boto for AWS S3, other data store transfer; can use AWS credentials (or Hetzner, or..) modern version using pip installed locally
- osmium libosmium2-dev, libosmium2-doc, python3-pyosmium, osmium-tool : a C++ framework for working with OSM data files; osmium library bindings for Python 3 ##
osmium version 1.14.0; libosmium version 2.18.0; Supported PBF compression types: none zlib lz4; Copyright (C) 2013-2022 Jochen Topf <jochen@topf.org>
- mapnik libmapnik3.1, python3-mapnik : mapnik rendering engine for OSM maps and others
libmapnik.so.3.1.0
- mapclassify : part of pySAL, versions must match with geopandas setup --LINK--
- lightgbm : MSFT python, updt pip3 install --user --upgrade-strategy=only-if-needed lightgbm ; v3.3.2
- DASK job lib -LINK-
- inline maps vs slippy maps : cartopy, other matplotlib variants are inline static; notebook web maps need js libs e.g. ipyleaflet
- EOmaps TODO evaluate here -LINK-
- georasters TODO evaluate -LINK
- Canada Met - Meteorological Service of Canada Open Data User Documentation -LINK-
- LiDAR : this is slightly painful since modern commercial GIS is flooded with this tech, delivered by advanced Western companies seeking something novel to sell. Changes to the LASzip licensing have enabled inclusion, but as of today, no Debian maintainer in place, and bas wants PDAL out at this time. -EMAIL- -EMAIL2- *update* PDAL via dot-deb is included in ol15
- DeepLearning "no" : deep learning has taken over in the modern AI/ML research, for funding and hype, but not on this disk. Please note that the ML libraries on osgeolive are completely useful, accurate and performant today.. no need for a constant and fast Internet connection, nor a compute infrastructure the size of a large naval ship, or special impenetrable models that can only be built by those machines. -LINK- Serious and in-demand applications like "facial recognition" are not included here. Many real applications to remote sensing are built using DeepLearning, but those are not available on this disk. Some benefits of not including DeepLearning : no dependencies on tricky GPU libs; not suffering from fast-updates of important ML core libraries; avoid black-box training models, and their disk space; avoid software patent problems in Western Nations.
"I feel that a common and well-known distro like this is an opportunity to build engineering cooperation, between teams that may not interact otherwise.. like the physical code sprints" -darkblueb in California
Example Notebooks in previous OSGeoLive -LINK-
Other Resources: Pangeo PYTHIA -LINK-
opendatacube "Cube in a Box" -LINK-
--
Jammy Notes
Using PPA ubuntugis-unstable & Ubuntu Universe dot-deb packages, the installation results look roughly like this:
mjam@x10jam:~$ cat /etc/lsb-release DISTRIB_ID=Ubuntu DISTRIB_RELEASE=22.04 DISTRIB_CODENAME=jammy DISTRIB_DESCRIPTION="Ubuntu 22.04 LTS" #-- libgeos3.11.1 (libgeos3.11.1) libgdal-dev (3.6.2+dfsg-1~jammy0) postgresql-14-postgis-3 (3.3.2+dfsg-1~jammy0) PGSQL="140" POSTGIS="3.3.2" GEOS="3.11.1-CAPI-1.17.0" PROJ="9.1.1" LIBJSON="0.15" #-- System: python: 3.10.4 (main, Apr 2 2022, 09:04:19) [GCC 11.2.0] executable: /usr/bin/python3 machine: Linux-5.15.0-25-generic-x86_64-with-glibc2.35 Python dependencies: pip: 22.0.2 setuptools: 59.6.0 sklearn: 0.23.2 numpy: 1.21.5 scipy: 1.8.0 Cython: None pandas: 1.3.5 matplotlib: 3.5.1 joblib: 0.17.0 threadpoolctl: 3.1.0 Built with OpenMP: True
Jupyter jammy Version
user@osgeolive:~$ jupyter --version Selected Jupyter core packages... IPython : 7.31.1 ipykernel : 6.7.0 ipywidgets : 6.0.0 jupyter_client : 7.1.2 jupyter_core : 4.9.1 jupyter_server : not installed jupyterlab : not installed nbclient : 0.5.6 nbconvert : 6.4.0 nbformat : 5.1.3 notebook : 6.4.8 qtconsole : not installed traitlets : 5.1.1 user@osgeolive:~$ jupyter --paths config: /home/user/.jupyter /home/user/.local/etc/jupyter /usr/etc/jupyter /usr/local/etc/jupyter /etc/jupyter data: /home/user/.local/share/jupyter /usr/local/share/jupyter /usr/share/jupyter runtime: /home/user/.local/share/jupyter/runtime
$ apt-get source python-dask-doc Reading package lists... Done Picking 'dask' as source package instead of 'python-dask-doc' NOTICE: 'dask' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/python-team/packages/dask.git Please use: git clone https://salsa.debian.org/python-team/packages/dask.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4,321 kB of source archives. Get:1 http://mirrors.wikimedia.org/ubuntu jammy/universe dask 2022.01.0+dfsg-1ubuntu1 (dsc) ... Fetched 4,321 kB in 18s (236 kB/s) dpkg-source: info: extracting dask in dask-2022.01.0+dfsg dpkg-source: info: unpacking dask_2022.01.0+dfsg.orig.tar.xz dpkg-source: info: unpacking dask_2022.01.0+dfsg-1ubuntu1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying pytest-futurewarning.patch dpkg-source: info: applying remove-bokeh-embeds.patch dpkg-source: info: applying use-debian-version.patch dpkg-source: info: applying reproducible-version.patch dpkg-source: info: applying Use-the-packaged-MathJax.patch dpkg-source: info: applying use-local-intersphinx.patch dpkg-source: info: applying use-local-reference-yaml.patch dpkg-source: info: applying js-yaml.patch dpkg-source: info: applying use-youtube-nocookie.patch dpkg-source: info: applying reproducible-config-autofunction.patch dpkg-source: info: applying 32bit-comatibility.patch dpkg-source: info: applying scipy1.8.patch
Jupyter Notebooks
Notes: the demo material from Actinia/GRASS, opendatacube and others use an AWS connection. We want to demo without requiring a connection. There was an idea that a video could be a local file with the demo. Enock said he can edit video, and that some High School Summer of Code students submit their project this way, but the quality is not professional. Angelos suggested that any demo in a video should also be available to actually run, if the network is working; also the GRASS Notebooks download data, and then use that as the demo, instead of doing work only in the clouds. Brian said we should move to beta1 with ordinary Jupyter and then make changes to the details of the Notebooks and python stack.
opendatacube
The Open Data Cube (ODC) is an Open-Source Geospatial Data Management and Analysis Software project that helps you harness the power of Earth observation data. At its core, the ODC is a set of Python libraries and PostgreSQL database that helps you work with geospatial raster data.
Core features:
- Catalogue large amounts of Earth observation data
- Use a Python based API for query and data access
- Perform exploratory data analysis using popular Python libraries like Xarray, Pandas, and Matplotlib
Details
Website: https://www.opendatacube.org/
Licence: Apache 2.0
Software Version: 1.8.7
Supported Platforms: Linux, Mac, Windows
API Interfaces: Python
25aug22
FOSS4G Pete Gadomski pete.gadomski at Gmail pystac v1.6.1 r/w static collections, catalogs, objects pystac-client v0.4.0 r/w stac api stactools v0.4.1 create,modify utils odc-stac v0.3.1 load stac assets into xarray
pystac version ref: https://trac.osgeo.org/osgeolive/ticket/2393
31july2022
~$ DATACUBE_CONFIG_PATH=~/.config/datacube/datacube.conf datacube -v system init 2022-08-01 04:26:09,231 8491 datacube INFO Running datacube command: /usr/bin/datacube -v system init Initialising database... 2022-08-01 04:26:10,032 8491 datacube.drivers.postgres._core INFO Ensuring user roles. 2022-08-01 04:26:10,044 8491 datacube.drivers.postgres._core INFO Creating schema. 2022-08-01 04:26:10,045 8491 datacube.drivers.postgres._core INFO Creating tables. 2022-08-01 04:26:10,093 8491 datacube.drivers.postgres._core INFO Creating triggers. 2022-08-01 04:26:10,100 8491 datacube.drivers.postgres._core INFO Creating added column. 2022-08-01 04:26:10,104 8491 datacube.drivers.postgres._core INFO Adding role grants. 2022-08-01 04:26:10,106 8491 datacube.index.postgres.index INFO Adding default metadata types. Created. Checking indexes/views. 2022-08-01 04:26:10,295 8491 datacube.drivers.postgres._api INFO Checking dynamic views/indexes. (rebuild views=True, indexes=False) Done.
26july2022
$ datacube product add /path/to/landsat-clip.yml
--- landsat-clip.yml name: clip_landsat description: example ortho imagery metadata_type: eo3 license: CC-BY-4.0 metadata: product: name: clip_landsat storage: crs: EPSG:32619 resolution: longitude: 28.497418829384827 latitude: -28.503958771796388 measurements: - name: imagery dtype: byte nodata: -32768.0 units: "meter"
$ rio info data/landsat/clip10.tif {"bounds": [374141.9163735037, 4597362.958980484, 450657.48593040195, 4662494.504774039], "colorinterp": ["gray"], "count": 1, "crs": "EPSG:32619", "descriptions": [null], "driver": "GTiff", "dtype": "uint8", "height": 2285, "indexes": [1], "interleave": "band", "lnglat": [-70.054716274406, 41.81639512026538], "mask_flags": [["all_valid"]], "nodata": null, "res": [28.497418829384827, 28.503958771796388], "shape": [2285, 2685], "tiled": false, "transform": [28.497418829384827, 0.0, 374141.9163735037, 0.0, -28.503958771796388, 4662494.504774039, 0.0, 0.0, 1.0], "units": [null], "width": 2685}
# UUID of the dataset id: f884df9b-4458-bbbb-aaaa-1a52a2db8a1a $schema: 'https://schemas.opendatacube.org/dataset' # Product name product: name: clip_landsat_example0 # Native CRS, assumed to be the same across all bands crs: "epsg:32619" # Mapping name:str -> { shape: Tuple[ny: int, nx: int] # transform: Tuple[float x 9]} # Captures image size, and geo-registration grids: default: # "default" grid must be present shape: [2285, 2685] transform: [28.497418829384827, 0.0, 374141.9163735037, 0.0, -28.503958771796388, 4662494.504774039, 0.0, 0.0, 1.0] # Per band storage information and references into `grids` # Bands using the "default" grid should not need to reference it measurements: red: # Band using "default" grid should omit `grid` key path: red.tif # Path relative to the dataset location # optional dataset location (useful for public datasets) #location: https://landsatonaws.com/L8/099/072/LC08_L1GT_099072_20200523_20200523_01_RT/metadata.yaml # Dataset properties, prefer STAC standard names here # Timestamp is the only compulsory field here properties: eo:platform: landsat-8 eo:instrument: OLI_TIRS # When recording time range use dtr:{start,end}_datetime dtr:start_datetime: 2020-01-01T07:02:02.233Z dtr:end_datetime: 2020-01-01T07:03:04.397Z # ODC specific "extensions" odc:processing_datetime: 2020-02-02T08:10:00.000Z odc:file_format: GeoTIFF odc:region_code: "074071" # provider specific unique identified for the same location # for Landsat '{:03d}{:03d}'.format(path, row) dea:dataset_maturity: final # one of: final| interim| nrt (near real time) odc:product_family: ard # can be useful for larger installations # Lineage only references UUIDs of direct source datasets # Mapping name:str -> [UUID] lineage: {} # set to empty object if no lineage is defined
25jul2022
user@osgeolive:~$ pip install --user lark-parser Collecting lark-parser Downloading lark_parser-0.12.0-py2.py3-none-any.whl (103 kB) ━---------------------------------━━━ 103.5/103.5 KB 352.8 kB/s eta 0:00:00 Installing collected packages: lark-parser ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. mappyfile 0.9.7 requires jsonref==0.2, but you have jsonref 0.1 which is incompatible. Successfully installed lark-parser-0.12.0 $ createdb datacube $ psql datacube -c 'create extension postgis' $ mkdir ~/.config/datacube $ cat << EOF > ~/.config/datacube/datacube.conf [datacube] db_database: datacube # A blank host will use a local socket. Specify a hostname (such as localhost) to use TCP. db_hostname: # Credentials are optional: you might have other Postgres authentication configured. # The default username otherwise is the current user id. db_username: user db_password: user EOF user@osgeolive:~$ DATACUBE_CONFIG_PATH=~/.config/datacube/datacube.conf datacube -v system init 2022-07-26 04:35:51,760 4663 datacube INFO Running datacube command: /usr/bin/datacube -v system init Initialising database... 2022-07-26 04:35:52,213 4663 datacube.drivers.postgres._core INFO Ensuring user roles. 2022-07-26 04:35:52,270 4663 datacube.drivers.postgres._core INFO Creating schema. 2022-07-26 04:35:52,271 4663 datacube.drivers.postgres._core INFO Creating tables. 2022-07-26 04:35:53,006 4663 datacube.drivers.postgres._core INFO Creating triggers. 2022-07-26 04:35:53,015 4663 datacube.drivers.postgres._core INFO Creating added column. 2022-07-26 04:35:53,055 4663 datacube.drivers.postgres._core INFO Adding role grants. 2022-07-26 04:35:53,066 4663 datacube.index.postgres.index INFO Adding default metadata types. Created. Checking indexes/views. 2022-07-26 04:35:53,376 4663 datacube.drivers.postgres._api INFO Checking dynamic views/indexes. (rebuild views=True, indexes=False) Done.
https://github.com/opendatacube/datacube-dataset-config https://github.com/opendatacube/datacube-dataset-config/tree/main/products
https://mybinder.org/v2/gh/opendatacube/odc-stac/develop?urlpath=lab/workspaces/demo
https://datacube-core.readthedocs.io/en/latest/installation/indexing-data/step-guide.html
18June2022 - opendatacube notebooks have very current software under development. Finding the stable parts is a challenge. #osgeolive alpha1 python-geo environment is surprisingly current, and matches a lot of ODC team dev environments including Folium. BUT two important parts are different: odc-devs have more DASK components (multi-processing chains); they have extended rasterio parts that I have not seen here yet. Others not present on alpha1 are JupyterLab parts - we are not going to use those (I read in the reviews late last year JupyterLab still has quality problems). ipyleaflet is developed with JupyterLab.. I am not confident ipyleaflet will work.. maybe. The alpha1 dot-deb packaging simplifies setup, MUCH simpler than their dev setup, and we have no DeepLearning ML GPU libs here.
Minimal datacube install from dot-deb
$apt install python3-xarray python3-cfgrib python3-datacube
Packages that will be installed: python3-cachetools python3-cloudpickle python3-dask python3-datacube python3-distributed python3-fsspec python3-heapdict python3-locket python3-msgpack python3-partd python3-psutil python3-sortedcontainers python3-tblib python3-toolz python3-tornado python3-zict
Jupyter R Install
dbb@x10jam:~$ sudo apt install r-cran-sf Reading package lists... Done Building dependency tree... Done Reading state information... Done The following additional packages will be installed: bzip2-doc gfortran gfortran-11 libblas-dev libbz2-dev libc-ares2 libgfortran-11-dev libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-json libjs-microplugin.js libjs-modernizr libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev libnlopt0 libnode72 libreadline-dev libudunits2-0 libudunits2-data littler node-highlight.js node-html5shiv node-normalize.css nodejs nodejs-doc r-base-core r-base-dev r-cran-abind r-cran-acepack r-cran-askpass r-cran-assertthat r-cran-backports r-cran-base64enc r-cran-bench r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-boot r-cran-brio r-cran-broom r-cran-cachem r-cran-callr r-cran-caret r-cran-catools r-cran-cba r-cran-checkmate r-cran-chron r-cran-class r-cran-classint r-cran-cli r-cran-cliapp r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-conquer r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-cvst r-cran-data.table r-cran-dbi r-cran-dbitest r-cran-dbplyr r-cran-ddalpha r-cran-decor r-cran-deldir r-cran-deoptimr r-cran-desc r-cran-diffobj r-cran-digest r-cran-dimred r-cran-domc r-cran-dplyr r-cran-drr r-cran-dt r-cran-dygraphs r-cran-e1071 r-cran-earth r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastica r-cran-fastmap r-cran-fastmatch r-cran-filehash r-cran-fnn r-cran-fontbitstreamvera r-cran-fontliberation r-cran-fontquiver r-cran-foreach r-cran-foreign r-cran-formula r-cran-fs r-cran-fts r-cran-furrr r-cran-future r-cran-future.apply r-cran-gdata r-cran-generics r-cran-geometry r-cran-geosphere r-cran-ggplot2 r-cran-gh r-cran-gitcreds r-cran-globals r-cran-glue r-cran-goftest r-cran-gower r-cran-gplots r-cran-gridextra r-cran-gtable r-cran-gtools r-cran-hexbin r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-igraph r-cran-ini r-cran-interp r-cran-ipred r-cran-isoband r-cran-iterators r-cran-jpeg r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth r-cran-knitr r-cran-ks r-cran-labeling r-cran-later r-cran-lattice r-cran-latticeextra r-cran-lava r-cran-lazyeval r-cran-lifecycle r-cran-linprog r-cran-listenv r-cran-littler r-cran-lme4 r-cran-lobstr r-cran-logcondens r-cran-lpsolve r-cran-lubridate r-cran-lwgeom r-cran-magic r-cran-magrittr r-cran-mapproj r-cran-maps r-cran-maptools r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-mclust r-cran-mda r-cran-memoise r-cran-mets r-cran-mgcv r-cran-mime r-cran-minqa r-cran-misc3d r-cran-mlbench r-cran-mlmetrics r-cran-mockery r-cran-mockr r-cran-modeldata r-cran-modelmetrics r-cran-multcomp r-cran-multicool r-cran-munsell r-cran-mvtnorm r-cran-nlme r-cran-nloptr r-cran-nnet r-cran-numderiv r-cran-openssl r-cran-palmerpenguins r-cran-parallelly r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plot3d r-cran-plotmo r-cran-plotrix r-cran-pls r-cran-plyr r-cran-png r-cran-polyclip r-cran-pracma r-cran-praise r-cran-prettycode r-cran-prettyunits r-cran-proc r-cran-processx r-cran-prodlim r-cran-profmem r-cran-progress r-cran-progressr r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-quadprog r-cran-quantmod r-cran-quantreg r-cran-r6 r-cran-ragg r-cran-rann r-cran-rappdirs r-cran-raster r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcppprogress r-cran-rcpproll r-cran-recipes r-cran-rematch2 r-cran-reshape2 r-cran-rex r-cran-rgdal r-cran-rgl r-cran-rlang r-cran-rmarkdown r-cran-rmysql r-cran-robustbase r-cran-rocr r-cran-rpart r-cran-rpostgresql r-cran-rprojroot r-cran-rsample r-cran-rspectra r-cran-rsqlite r-cran-rstudioapi r-cran-runit r-cran-s2 r-cran-sandwich r-cran-sass r-cran-scales r-cran-selectr r-cran-setrng r-cran-sfsmisc r-cran-shiny r-cran-slider r-cran-sodium r-cran-sourcetools r-cran-sp r-cran-sparsem r-cran-spatial r-cran-spatstat r-cran-spatstat.core r-cran-spatstat.data r-cran-spatstat.geom r-cran-spatstat.linnet r-cran-spatstat.sparse r-cran-spatstat.utils r-cran-squarem r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-svglite r-cran-sys r-cran-systemfonts r-cran-teachingdemos r-cran-tensor r-cran-terra r-cran-testit r-cran-testthat r-cran-textshaping r-cran-th.data r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tikzdevice r-cran-timedate r-cran-timereg r-cran-timeseries r-cran-tinytex r-cran-tseries r-cran-ttr r-cran-units r-cran-utf8 r-cran-vctrs r-cran-vdiffr r-cran-viridis r-cran-viridislite r-cran-waldo r-cran-warp r-cran-webutils r-cran-withr r-cran-wk r-cran-wkutils r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo r-doc-html r-recommended ttf-bitstream-vera Get:1 http://mirrors.wikimedia.org/ubuntu jammy/main amd64 bzip2-doc all 1.0.8-5build1 [500 kB] ... Get:325 http://mirrors.wikimedia.org/ubuntu jammy/universe amd64 r-recommended all 4.1.2-1ubuntu2 [2,624 B] Fetched 299 MB in 12min 45s (391 kB/s) Extracting templates from packages: 100% Selecting previously unselected package bzip2-doc. (Reading database ... 438665 files and directories currently installed.) Setting up libjs-json (0~20210531+~1.0.8-1) ... Setting up r-cran-bh (1.74.0-2) ... Setting up bzip2-doc (1.0.8-5build1) ... Setting up ttf-bitstream-vera (1.10-8.2) ... Setting up r-doc-html (4.1.2-1ubuntu2) ... Setting up libgfortran-11-dev:amd64 (11.2.0-19ubuntu1) ... Setting up libjs-sifter.js (0.6.0+dfsg-2) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up node-html5shiv (3.7.3+dfsg-4) ... Setting up libnlopt0:amd64 (2.7.1-3build1) ... Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... Setting up libc-ares2:amd64 (1.18.1-1build1) ... Setting up libreadline-dev:amd64 (8.1.2-1) ... Setting up libjs-modernizr (2.6.2+ds1-4) ... Setting up libnode72:amd64 (12.22.9~dfsg-1ubuntu3) ... Setting up libjs-jquery-datatables (1.11.4+dfsg-1) ... Setting up libjs-es5-shim (4.6.4-1) ... Setting up r-base-core (4.1.2-1ubuntu2) ... Creating config file /etc/R/Renviron with new version
Note: https://isciences.gitlab.io/exactextractr/
pangeo test install
https://github.com/pangeo-data/pangeo-tutorial-gallery
$ pip install --user geocube Collecting geocube Downloading geocube-0.3.2-py3-none-any.whl (20 kB) Requirement already satisfied: appdirs in /usr/lib/python3/dist-packages (from geocube) (1.4.4) Requirement already satisfied: pyproj>=2 in /usr/lib/python3/dist-packages (from geocube) (3.3.0) Requirement already satisfied: click>=6.0 in /usr/lib/python3/dist-packages (from geocube) (8.0.3) Collecting rioxarray>=0.4 Downloading rioxarray-0.11.1.tar.gz (49 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 49.7/49.7 KB 283.0 kB/s eta 0:00:00 Installing build dependencies ... done Getting requirements to build wheel ... done Preparing metadata (pyproject.toml) ... done Collecting xarray>=0.17 Downloading xarray-2022.3.0-py3-none-any.whl (870 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 870.9/870.9 KB 388.3 kB/s eta 0:00:00 Requirement already satisfied: numpy>=1.20 in /usr/lib/python3/dist-packages (from geocube) (1.21.5) Requirement already satisfied: scipy in /usr/lib/python3/dist-packages (from geocube) (1.8.0) Requirement already satisfied: geopandas>=0.7 in /usr/lib/python3/dist-packages (from geocube) (0.10.2) Collecting odc-geo Downloading odc_geo-0.2.1-py3-none-any.whl (102 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 102.8/102.8 KB 279.6 kB/s eta 0:00:00 Requirement already satisfied: rasterio in /usr/lib/python3/dist-packages (from geocube) (1.2.10) Requirement already satisfied: packaging in /usr/lib/python3/dist-packages (from rioxarray>=0.4->geocube) (21.3) Requirement already satisfied: pandas>=1.1 in /usr/lib/python3/dist-packages (from xarray>=0.17->geocube) (1.3.5) Requirement already satisfied: affine in /usr/lib/python3/dist-packages (from odc-geo->geocube) (2.3.0) Requirement already satisfied: cachetools in /usr/lib/python3/dist-packages (from odc-geo->geocube) (5.0.0) Requirement already satisfied: shapely in /usr/lib/python3/dist-packages (from odc-geo->geocube) (1.8.0) Building wheels for collected packages: rioxarray Building wheel for rioxarray (pyproject.toml) ... done Created wheel for rioxarray: filename=rioxarray-0.11.1-py2.py3-none-any.whl size=50942 sha256=61bb0bfd8815420dc5129f7c7a14afff11796b6978c976a5b3001e54b16ac5e4 Stored in directory: /home/dbb/.cache/pip/wheels/65/e9/a4/20811fc3ecaddf11c40d1e649d0d1bbe3cbbbd71559ca3cd9b Successfully built rioxarray Installing collected packages: xarray, odc-geo, rioxarray, geocube WARNING: The script geocube is installed in '/home/dbb/.local/bin' which is not on PATH. Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. Successfully installed geocube-0.3.2 odc-geo-0.2.1 rioxarray-0.11.1 xarray-2022.3.0
env
TODO pytest tests integration_tests in datacube-core
GDAL 3.4.3 numpy 1.21.5 scipy 1.8.0 dask 2022.1.0+dfsg pandas 1.3.5 geopandas 0.10.2 ipython 7.31.1 matplotlib 3.5.1 pyproj 3.3.0 scikit-learn 0.23.2 seaborn 0.11.2 datacube 0.0.0 APScheduler 0.0.0 Automat 20.2.0 Babel 2.8.0 Brotli 1.0.9 Cartopy 0.0.0 Cheetah3 3.2.6 Deprecated 1.2.13 Django 2.2.24 EOxServer 1.1.2 Faker 0.9.3 Fiona 1.8.21 Flask 2.0.1 GeoAlchemy2 0.10.2 GeoNode 3.3.2.post2 HeapDict 1.0.1 Jinja2 3.0.3 Mako 1.1.3 MapProxy 1.15.1 Markdown 3.3.6 MarkupSafe 2.0.1 Nik4 1.7.0 OWSLib 0.25.0 Pillow 9.0.1 PyGObject 3.42.1 PyHamcrest 2.0.2 PyJWT 2.3.0 PyNaCl 1.5.0 PyOpenGL 3.1.5 PyQt5-sip 12.9.1 PyQt5 5.15.6 PyYAML 5.4.1 Pygments 2.11.2 QScintilla 2.11.6 Rtree 0.9.7 SQLAlchemy 1.4.31 SecretStorage 3.3.1 Send2Trash 1.8.1b0 Shapely 1.8.0 Twisted 22.1.0 Unidecode 1.3.3 Werkzeug 2.0.2 adal 1.2.2 affine 2.3.0 aiohttp 3.8.1 aioredis 1.3.1 aiosignal 1.2.0 amqp 5.0.9 anyjson 0.3.3 appdirs 1.4.4 apt-xapian-index 0.49 argon2-cffi 21.1.0 async-timeout 4.0.1 attrs 21.2.0 avro 1.11.0 azure-template 0.0.18b3 backcall 0.2.0 bcrypt 3.2.0 beautifulsoup4 4.10.0 billiard 3.6.4.0 bleach 4.1.0 blinker 1.4 boto3 1.20.34 botocore 1.23.34 branca 0.4.2 cachetools 5.0.0 celery 5.2.3 certifi 2020.6.20 cftime 1.5.2 chardet 4.0.0 charset-normalizer 2.0.6 click-didyoumean 0.0.3 click-plugins 1.1.1 click-repl 0.2.0 click 8.0.3 cligj 0.7.2 cloudpickle 2.0.0 colorama 0.4.4 command-not-found 0.3 constantly 15.1.0 coverage 6.2 croniter 1.0.15 cryptography 3.4.8 cupshelpers 1.0 cycler 0.11.0 dbus-python 1.2.18 decorator 4.4.2 defer 1.0.6 defusedxml 0.7.1 deprecation 2.0.7 descartes 1.1.0 distributed 2022.1.0+ds.1 distro-info =1.1build1 distro 1.7.0 dj-database-url 0.5.0 dj-pagination 2.5.0 dnspython 2.1.0 docker 5.0.3 drf-extensions 0.7.1 drf-spectacular 0.21.1 drf-writable-nested 0.6.3 dynamic-rest 2.0.0 elasticsearch 7.16.2 entrypoints 0.4 ephem 4.1.3 factory-boy 2.11.1 flake8 4.0.1 flaky 3.7.0 folium 0.0.0 fonttools 4.29.1 frozenlist 1.2.0 fs 2.4.12 fsspec 2022.1.0 future 0.18.2 galternatives 1.0.8 geographiclib 1.52 geoip2 2.9.0 geojson 2.5.0 geolinks 0.2.0 geonode-announcements 2.0.2 geonode-avatar 5.0.7 geonode-dialogos 3.0.1 geonode-django-activity-stream 0.10.0 geonode-oauth-toolkit 2.2.2 geonode-user-messages 2.0.2 geoserver-restconfig 2.0.7 gisdata 0.5.4 glob2 0.5 gn-arcrest 10.5.4 gn-gsimporter 2.0.1 gps 3.22 greenlet 1.1.2 gunicorn 20.1.0 hiredis 1.0.1 html5lib 1.1 httplib2 0.20.2 humanize 0.0.0 hyperlink 21.0.0 idna 3.3 importlib-metadata 4.6.4 incremental 21.3.0 inflection 0.3.1 iniconfig 1.1.1 invoke 1.4.1 iotop 0.6 ipykernel 6.7.0 ipyleaflet 0.17.0 ipython_genutils 0.2.0 ipywidgets 6.0.0 iso8601 1.0.2 isodate 0.6.1 itsdangerous 2.1.0 jdcal 1.0 jedi 0.18.0 jeepney 0.7.1 jmespath 0.10.0 joblib 0.17.0 jsonfield 3.1.0 jsonref 0.1 jsonschema 3.2.0 jupyter-client 7.1.2 jupyter-core 4.9.1 jupyter-packaging 0.11.1 jupyterlab-pygments 0.1.2 jwcrypto 1.0 keyring 23.5.0 kiwisolver 1.3.2 kombu 5.2.3 language-selector 0.1 lark-parser 0.12.0 launchpadlib 1.10.16 lazr.restfulclient 0.14.4 lazr.uri 1.0.6 locket 0.2.1 lubuntu-update-notifier 0.4.dev0 lxml 4.8.0 lz4 3.1.3+dfsg mapnik 3.0.23 mappyfile 0.9.7 mapscript 7.6.4 matplotlib-inline 0.1.3 maxminddb 2.0.3 mccabe 0.6.1 mercantile 1.1.5 mock 4.0.3 more-itertools 8.10.0 mpmath 0.0.0 msal-extensions 1.0.0 msal 1.17.0 msgpack 1.0.3 msrest 0.6.21 msrestazure 0.6.4 multidict 5.1.0 munch 2.5.0 nbclient 0.5.6 nbconvert 6.4.0 nbformat 5.1.3 nest-asyncio 1.5.4 netCDF4 1.5.8 netifaces 0.11.0 networkx 2.4 notebook 6.4.8 oauthlib 3.2.0 osmapi 3.0.0 osmium 3.2.0 packaging 21.3 palettable 3.3.0 pandocfilters 1.5.0 paramiko 2.9.3 parse-type 0.5.6 parse 1.19.0 parso 0.8.1 partd 1.2.0 pbr 5.8.0 pexpect 4.8.0 pickleshare 0.7.5 pilkit 2.0 pinax-notifications 6.0.0 pinax-ratings 4.0.0 plotly 5.4.0 pluggy 0.13.0 ply 3.11 portalocker 2.2.1 prometheus-client 0.9.0 prompt-toolkit 3.0.28 psutil 5.9.0 psycopg2 2.8.6 ptyprocess 0.7.0 py 1.10.0 pyOpenSSL 21.0.0 pyasn1-modules 0.2.1 pyasn1 0.4.8 pycairo 1.20.1 pycodestyle 2.8.0 pycountry 20.7.3 pycql 0.0.8 pycsw 2.6.1 pycups 2.0.1 pydantic 1.8.2 pyflakes 2.4.0 pygeoapi 0.12.0 pylibmc 1.5.2 pyows 0.2.6 pyparsing 2.4.7 pyrsistent 0.18.1 pysal 2.1.0 pyserial 3.5 pyshp 2.2.0 pytest-bdd 3.2.1 pytest-django 3.5.1 pytest 6.2.5 python-apt 2.3.0+ubuntu2 python-crontab 2.6.0 python-dateutil 2.8.1 python-debian 0.1.43ubuntu1 python-etcd 0.4.5 python-memcached 1.58 python-mimeparse 1.6.0 python-slugify 4.0.0 python3-openid 3.2.0 pytz 2022.1 pywps 4.5.1 pyxdg 0.27 pyzmq 22.3.0 rasterio 1.3.0 redis 3.5.3 requests-oauthlib 1.3.0 requests-toolbelt 0.9.1 requests 2.25.1 s3transfer 0.5.0 schema 0.6.7 selenium 4.0.0a1 service-identity 18.1.0 sherlock 0.3.2 six 1.16.0 smart-open 5.2.1 snuggs 1.4.7 sortedcontainers 2.1.0 soupsieve 2.3.1 sqlparse 0.4.2 sympy 1.9 systemd-python 234 tblib 1.7.0 tenacity 6.3.1 terminado 0.13.1 testpath 0.5.0 threadpoolctl 3.1.0 timeout-decorator 0.5.0 tinydb 3.15.2 toml 0.10.2 tomlkit 0.9.2 toolz 0.11.2 tornado 6.1 tqdm 4.57.0 traitlets 5.1.1 traittypes 0.2.1 typing-extensions 3.10.0.2 tzlocal 2.1 ua-parser 0.10.0 uamqp 1.5.1 ubuntu-advantage-tools 27.7 ubuntu-drivers-common 0.0.0 ufoLib2 0.13.1 ufw 0.36.1 unattended-upgrades 0.1 unicodecsv 0.14.1 unicodedata2 14.0.0 uritemplate 3.0.1 urllib3 1.26.5 usb-creator 0.3.7 user-agents 2.2.0 vine 5.0.0 wadllib 1.3.6 wcwidth 0.2.5 webencodings 0.5.1 websocket-client 1.2.3 websockets 9.1 widgetsnbextension 2.0.0 wrapt 1.13.3 wxPython 4.0.7 xarray 0.16.1 xdg 5 xkit 0.0.0 xmljson 0.1.9 xmltodict 0.12.0 xyzservices 2022.6.0 yarl 1.7.2 zict 2.0.0 zipp 1.0.0 zipstream 1.1.4 zope.interface 5.4.0 django-allauth 0.47.0 django-appconf 1.0.3 django-autocomplete-light 3.5.1 django-bootstrap3-datetimepicker-2 2.8.2 django-celery-beat 2.2.1 django-celery-results 2.0.0 django-cors-headers 3.11.0 django-downloadview 2.3.0 django-filter 2.4.0 django-floppyforms 1.9.0 django-forms-bootstrap 3.1.0 django-geonode-mapstore-client 3.3.2 django-grappelli 2.15.1 django-guardian 2.4.0 django-haystack 3.1.1 django-imagekit 4.1.0 django-invitations 1.9.3 django-ipware 4.0.0 django-js-asset 1.2.2 django-jsonfield-backport 1.0.2 django-leaflet 0.27.1 django-markdownify 0.9.1 django-model-utils 0.0.0 django-modeltranslation 0.17.5 django-mptt 0.13.2 django-polymorphic 3.1.0 django-recaptcha 2.0.6 django-storages 1.12.3 django-taggit 2.1.0 django-tastypie 0.14.4 django-timezone-field 5.0 django-tinymce 3.3.0 django-treebeard 4.5.1 django-user-agents 0.4.0 django-uuid-upload-path 1.0.0 django-widget-tweaks 1.4.8 djangorestframework-gis 0.18 djangorestframework-guardian 0.3.0 djangorestframework 3.12.4 azure-agrifood-farming 1.0.0b1 azure-ai-anomalydetector 3.0.0b3 azure-ai-formrecognizer 3.2.0b2 azure-ai-language-conversations 1.0.0b1 azure-ai-language-questionanswering 1.0.0 azure-ai-metricsadvisor 1.0.1 azure-ai-textanalytics 5.2.0b3 azure-ai-translation-document 1.0.0b6 azure-appconfiguration 1.3.0 azure-applicationinsights 0.1.0 azure-batch 11.0.0 azure-cognitiveservices-anomalydetector 0.3.0 azure-cognitiveservices-formrecognizer 0.1.1 azure-cognitiveservices-knowledge-qnamaker 0.3.0 azure-cognitiveservices-language-luis 0.7.0 azure-cognitiveservices-language-spellcheck 2.0.0 azure-cognitiveservices-language-textanalytics 0.2.0 azure-cognitiveservices-personalizer 0.1.0 azure-cognitiveservices-search-autosuggest 0.2.0 azure-cognitiveservices-search-customimagesearch 0.2.0 azure-cognitiveservices-search-customsearch 0.3.0 azure-cognitiveservices-search-entitysearch 2.0.0 azure-cognitiveservices-search-imagesearch 2.0.0 azure-cognitiveservices-search-newssearch 2.0.0 azure-cognitiveservices-search-videosearch 2.0.0 azure-cognitiveservices-search-visualsearch 0.2.0 azure-cognitiveservices-search-websearch 2.0.0 azure-cognitiveservices-vision-computervision 0.9.0 azure-cognitiveservices-vision-contentmoderator 1.0.0 azure-cognitiveservices-vision-customvision 3.1.0 azure-cognitiveservices-vision-face 0.5.0 azure-common 1.1.28 azure-communication-chat 1.1.0 azure-communication-identity 1.0.1 azure-communication-networktraversal 1.0.0b1 azure-communication-phonenumbers 1.0.1 azure-communication-sms 1.0.1 azure-confidentialledger 1.0.0b1 azure-containerregistry 1.0.0b7 azure-core 1.20.1 azure-data-tables 12.1.1 azure-digitaltwins-core 1.1.0 azure-eventgrid 4.7.0 azure-eventhub-checkpointstoreblob-aio 1.1.4 azure-eventhub-checkpointstoreblob 1.1.4 azure-eventhub-checkpointstoretable 1.0.0b1 azure-eventhub 5.6.2 azure-graphrbac 0.61.1 azure-identity 1.7.1 azure-iot-deviceupdate 1.0.0b1 azure-iot-modelsrepository 1.0.0b2 azure-keyvault-administration 4.1.0b2 azure-keyvault-certificates 4.4.0b2 azure-keyvault-keys 4.5.0b5 azure-keyvault-secrets 4.4.0b2 azure-keyvault 4.1.0 azure-loganalytics 0.1.0 azure-media-analytics-edge 1.0.0b1 azure-media-videoanalyzer-edge 1.0.0b3 azure-messaging-webpubsubservice 1.0.0b3 azure-mgmt-advisor 9.0.0 azure-mgmt-agfood 1.0.0b1 azure-mgmt-agrifood 1.0.0b1 azure-mgmt-alertsmanagement 1.0.0 azure-mgmt-apimanagement 2.1.0 azure-mgmt-appconfiguration 2.0.0 azure-mgmt-applicationinsights 1.0.0 azure-mgmt-appplatform 6.1.0 azure-mgmt-attestation 1.0.0 azure-mgmt-authorization 2.0.0 azure-mgmt-automanage 1.0.0b2 azure-mgmt-automation 1.1.0b1 azure-mgmt-avs 7.0.0b1 azure-mgmt-azureadb2c 1.0.0b1 azure-mgmt-azurearcdata 1.0.0 azure-mgmt-azurestack 1.0.0 azure-mgmt-azurestackhci 6.1.0b1 azure-mgmt-baremetalinfrastructure 1.0.0 azure-mgmt-batch 16.0.0 azure-mgmt-batchai 7.0.0b1 azure-mgmt-billing 6.0.0 azure-mgmt-botservice 1.0.0 azure-mgmt-cdn 11.0.0 azure-mgmt-changeanalysis 1.0.0 azure-mgmt-chaos 1.0.0b2 azure-mgmt-cognitiveservices 12.0.0 azure-mgmt-commerce 6.0.0 azure-mgmt-communication 1.0.0 azure-mgmt-compute 23.1.0 azure-mgmt-confidentialledger 1.0.0b1 azure-mgmt-confluent 2.0.0b1 azure-mgmt-consumption 8.0.0 azure-mgmt-containerinstance 9.1.0 azure-mgmt-containerregistry 8.2.0 azure-mgmt-containerservice 16.3.0 azure-mgmt-core 1.3.0 azure-mgmt-cosmosdb 7.0.0b2 azure-mgmt-costmanagement 3.0.0 azure-mgmt-customproviders 1.0.0 azure-mgmt-databox 1.0.0 azure-mgmt-databoxedge 1.0.0 azure-mgmt-databricks 1.1.0b1 azure-mgmt-datadog 2.0.0 azure-mgmt-datafactory 2.0.0 azure-mgmt-datalake-analytics 0.6.0 azure-mgmt-datalake-store 1.0.0 azure-mgmt-datamigration 10.0.0 azure-mgmt-dataprotection 1.0.0b1 azure-mgmt-datashare 1.0.0 azure-mgmt-deploymentmanager 1.0.0 azure-mgmt-deviceupdate 1.0.0b3 azure-mgmt-devspaces 1.0.0b1 azure-mgmt-devtestlabs 9.0.0 azure-mgmt-digitaltwins 6.0.0 azure-mgmt-dns 8.0.0 azure-mgmt-documentdb 0.1.3 azure-mgmt-edgegateway 0.1.0 azure-mgmt-edgeorder 1.0.0b1 azure-mgmt-elastic 1.0.0 azure-mgmt-eventgrid 9.0.0 azure-mgmt-eventhub 10.0.0 azure-mgmt-extendedlocation 1.0.0 azure-mgmt-fluidrelay 1.0.0b1 azure-mgmt-frontdoor 1.0.0 azure-mgmt-guestconfig 1.0.0b1 azure-mgmt-hanaonazure 1.0.0 azure-mgmt-hdinsight 9.0.0 azure-mgmt-healthbot 1.0.0b1 azure-mgmt-healthcareapis 1.1.0b1 azure-mgmt-hybridcompute 7.0.0 azure-mgmt-hybridkubernetes 1.1.0 azure-mgmt-hybridnetwork 1.0.0 azure-mgmt-imagebuilder 1.0.0b1 azure-mgmt-iotcentral 9.0.0b1 azure-mgmt-iothub 2.1.0 azure-mgmt-iothubprovisioningservices 1.0.0 azure-mgmt-keyvault 9.2.0 azure-mgmt-kubernetesconfiguration 1.0.0b1 azure-mgmt-kusto 2.1.0 azure-mgmt-labservices 1.0.0 azure-mgmt-loganalytics 11.0.0 azure-mgmt-logic 9.0.0 azure-mgmt-logz 1.0.0 azure-mgmt-machinelearningcompute 1.0.0b1 azure-mgmt-machinelearningservices 1.0.0 azure-mgmt-maintenance 2.0.0 azure-mgmt-managedservices 6.0.0 azure-mgmt-managementgroups 1.0.0 azure-mgmt-managementpartner 1.0.0 azure-mgmt-maps 2.0.0 azure-mgmt-marketplaceordering 1.1.0 azure-mgmt-media 8.0.0 azure-mgmt-mixedreality 1.0.0 azure-mgmt-monitor 2.0.0 azure-mgmt-msi 6.0.0b1 azure-mgmt-netapp 5.1.0 azure-mgmt-network 19.2.0 azure-mgmt-notificationhubs 7.0.0 azure-mgmt-operationsmanagement 1.0.0 azure-mgmt-peering 1.0.0 azure-mgmt-policyinsights 1.1.0b1 azure-mgmt-portal 1.0.0 azure-mgmt-powerbidedicated 1.0.0 azure-mgmt-powerbiembedded 2.0.0 azure-mgmt-privatedns 1.0.0 azure-mgmt-purview 1.0.0 azure-mgmt-quantum 1.0.0b2 azure-mgmt-quota 1.0.0b2 azure-mgmt-rdbms 10.0.0 azure-mgmt-recoveryservices 2.0.0 azure-mgmt-recoveryservicesbackup 3.0.0 azure-mgmt-recoveryservicessiterecovery 1.0.0b1 azure-mgmt-redhatopenshift 1.0.0 azure-mgmt-redis 13.0.0 azure-mgmt-redisenterprise 1.0.0 azure-mgmt-regionmove 1.0.0b1 azure-mgmt-relay 1.1.0 azure-mgmt-reservations 1.0.0 azure-mgmt-resource 20.0.0 azure-mgmt-resourcegraph 8.1.0b1 azure-mgmt-resourcehealth 1.0.0b1 azure-mgmt-resourcemover 1.1.0b2 azure-mgmt-scheduler 7.0.0b1 azure-mgmt-search 8.0.0 azure-mgmt-security 2.0.0b1 azure-mgmt-securityinsight 1.0.0b1 azure-mgmt-serialconsole 1.0.0 azure-mgmt-servermanager 2.0.0 azure-mgmt-servicebus 7.1.0 azure-mgmt-servicefabric 2.0.0 azure-mgmt-servicefabricmanagedclusters 1.0.0 azure-mgmt-servicelinker 1.0.0b1 azure-mgmt-signalr 1.0.0 azure-mgmt-sql 3.0.1 azure-mgmt-sqlvirtualmachine 1.0.0b1 azure-mgmt-storage 19.0.0 azure-mgmt-storagecache 1.1.0 azure-mgmt-storageimportexport 1.0.0b1 azure-mgmt-storagepool 1.0.0 azure-mgmt-storagesync 1.0.0 azure-mgmt-streamanalytics 1.0.0rc1 azure-mgmt-subscription 1.0.0 azure-mgmt-support 6.0.0 azure-mgmt-synapse 2.1.0b2 azure-mgmt-testbase 1.0.0b1 azure-mgmt-timeseriesinsights 1.0.0 azure-mgmt-trafficmanager 1.0.0b1 azure-mgmt-videoanalyzer 1.0.0b3 azure-mgmt-vmwarecloudsimple 1.0.0b1 azure-mgmt-web 5.0.0 azure-mgmt-webpubsub 1.0.0 azure-mgmt-workloadmonitor 1.0.0b2 azure-mixedreality-authentication 1.0.0b1 azure-monitor-opentelemetry-exporter 1.0.0b6 azure-monitor-query 1.0.1 azure-purview-administration 1.0.0b2 azure-purview-catalog 1.0.0b3 azure-purview-scanning 1.0.0b3 azure-schemaregistry-avroserializer 1.0.0b4 azure-schemaregistry 1.0.0 azure-search-documents 11.3.0b5 azure-security-attestation 1.0.1 azure-servicebus 7.4.0 azure-servicefabric 8.0.0.0 azure-servicemanagement-legacy 0.20.7 azure-storage-blob-changefeed 12.0.0b3 azure-storage-blob 12.9.0 azure-storage-file-datalake 12.5.0 azure-storage-file-share 12.6.0 azure-storage-queue 12.1.6 azure-synapse-accesscontrol 0.8.0 azure-synapse-artifacts 0.10.0 azure-synapse-managedprivateendpoints 0.5.0 azure-synapse-monitoring 0.3.0 azure-synapse-spark 0.8.0 azure-synapse 0.1.1 ----------------------------- ---------------------------- Package Version
http://ci.terria.io/main/ https://datacube-core.readthedocs.io/en/latest/installation/database/setup.html https://docs.xarray.dev/en/stable/user-guide/plotting.html#robust https://github.com/opendatacube/datacube-core/releases/tag/1.8.7 https://github.com/opendatacube/odc-geo/issues https://github.com/opendatacube/odc-geo/releases/tag/v0.2.0 https://github.com/opendatacube/odc-stac/releases/tag/v0.3.0 https://github.com/opendatacube/odc-stac/wiki/Generating-Rotated-Images-to-Save-Space https://github.com/opendatacube/odc-tools/blob/develop/apps/dc_tools/odc/apps/dc_tools/fs_to_dc.py https://maps.digitalearth.africa/ https://odc-geo.readthedocs.io/en/latest/_api/odc.geo.xr.ODCExtensionDs.html https://odc-geo.readthedocs.io/en/latest/_api/odc.geo.xr.ODCExtension.html https://odc-geo.readthedocs.io/en/latest/raster-tools.html#plotting-on-a-map https://odc-stac-demo.netlify.app/ https://sandbox.digitalearth.africa/hub/login?next=%2Fhub%2F https://www.usgs.gov/landsat-missions/landsat-collection-2-level-2-science-products Alternately, you can configure the ODC connection to Postgres using environment variables: DB_HOSTNAME DB_USERNAME DB_PASSWORD DB_DATABASE
DevInstall via Paul Haesler on Slack #open-data-cube
# install numpy, pyproj and rasterio from Ubuntu distro via apt sudo apt-get install python3-numpy python3-rasterio python3-pyproj # Create virtualenv inheriting numpy and rasterio from system site-packages. cd ~/venvs virtualenv -p `which python3` --system-site-packages odc # Activate new virtualenv source odc/bin/activate # Compile and install cf-units from source: cd ~/src git clone git@github.com:SciTools/cf-units.git cf-units cd cf-units pip install -e . # install datacube-core from source (from pypi should be fine after next release) cd ~/src/datacube/core pip install -e .[all]
odc-geo
$ pip install --user --upgrade-strategy only-if-needed odc-geo Collecting odc-geo Downloading odc_geo-0.1.1-py3-none-any.whl (81 kB) | | 81 kB 254 kB/s Requirement already satisfied: affine in ./.local/lib/python3.8/site-packages (from odc-geo) (2.3.0) Collecting cachetools Downloading cachetools-5.0.0-py3-none-any.whl (9.1 kB) Requirement already satisfied: numpy in ./.local/lib/python3.8/site-packages (from odc-geo) (1.21.5) Requirement already satisfied: pyproj in /usr/lib/python3/dist-packages (from odc-geo) (3.2.1) Requirement already satisfied: shapely in /usr/lib/python3/dist-packages (from odc-geo) (1.8.0) Installing collected packages: cachetools, odc-geo Successfully installed cachetools-5.0.0 odc-geo-0.1.1
odc-stac
## from STAC-load-ms-S2.ipynb import dask.distributed import dask.utils import numpy as np import planetary_computer as pc import xarray as xr from IPython.display import display from pystac_client import Client from odc.stac import configure_rio, stac_load ## from STAC-load-e84-aws.ipynb import dask.distributed import folium import folium.plugins import geopandas as gpd import shapely.geometry from IPython.display import HTML, display from pystac_client import Client from odc.stac import configure_rio, stac_load
Focal Notes
Focal Setup Steps
APT install into the system OS python, major, stable parts first.. as a set .. ;
## note gdal & postgis are installed at an earlier step via package dot-deb ## ------------------------------------------------------------------------- 591 sudo apt install python3-dev python3-pip 405 sudo apt install ipython3 python3-scipy apt install python3-pandas ## <== stale version currently 408 sudo apt install r-cran-sf ## match libgeos w/R language bindings 429 sudo apt install python3-shapely python3-fiona 614 sudo apt install --yes python3-geoalchemy2 ##-- show the parts explicitly for Jupyter on Ubuntu via dot-deb --------------- 670 sudo apt install --yes jupyter-core jupyter-client jupyter-console jupyter-nbformat jupyter-nbconvert \ jupyter-notebook python3-ipykernel 673 sudo apt install python-notebook-doc jupyter ##-- sudo apt install python3-sklearn-lib python3-pyosmium
next
pip install --user --upgrade-strategy=only-if-needed py3-pkg # installs to `~/.local/lib/python3.8/` # 605 pip install --user wheel 835 pip install --user --upgrade --upgrade-strategy=only-if-needed pandas 836 pip install --user --upgrade --upgrade-strategy=only-if-needed scikit-image 837 pip install --user --upgrade --upgrade-strategy=only-if-needed imageio 838 pip install --user --upgrade --upgrade-strategy=only-if-needed numba 630 pip install --user folium 839 pip install --user --upgrade --upgrade-strategy=only-if-needed sentinelhub 867 pip install --user --upgrade --upgrade-strategy=only-if-needed openeo 841 pip install --user --upgrade --upgrade-strategy=only-if-needed eo-learn 853 pip install --user --upgrade --upgrade-strategy=only-if-needed ipyleaflet 606 pip install --user lightgbm ## libs also have an R interface, optional engines all [ rasterio, networkx, sklearn, boto, more... ] into ~/.local/lib/python3.8/ (below) note: https://pip.pypa.io/en/stable/cli/pip_install/#hash-checking-mode
next
$ mkdir -p ~/.jupyter/notebooks/ ;# default Jupyter notebooks & assets ; TODO will change.
this opinionated install will update/amend/evolve as installer code and more dot-debs are crafted later this year.
$ ./do_start_jupyter.sh #--------------------------- #!/bin/bash jupyter notebook --no-browser --ip=192.168.1.131 --notebook-dir=.jupyter/notebooks
~/.bashrc ##- PATH=$PATH:~/.local/bin
dbb@focalk:/etc$ cat lsb-release DISTRIB_ID=Ubuntu DISTRIB_RELEASE=20.04 DISTRIB_CODENAME=focal DISTRIB_DESCRIPTION="Ubuntu 20.04.3 LTS" #-- libgeos3.10.1 (3.10.1-1~focal0) libgdal-dev (3.4.0+dfsg-1~focal0) postgresql-12-postgis-3 (3.2.0+dfsg-1~focal0) PGSQL="120" GEOS="3.10.1-CAPI-1.16.0" PROJ="8.2.0" LIBXML="2.9.10" LIBJSON="0.13.1" #--
geoxarray
$ pip install --user rioxarray Collecting rioxarray Downloading rioxarray-0.10.3.tar.gz (47 kB) | | 47 kB 272 kB/s Installing build dependencies ... done Getting requirements to build wheel ... done Preparing wheel metadata ... done Requirement already satisfied: packaging in /usr/lib/python3/dist-packages (from rioxarray) (20.3) Requirement already satisfied: xarray>=0.17 in ./.local/lib/python3.8/site-packages (from rioxarray) (0.21.1) Requirement already satisfied: rasterio>=1.1.1 in ./.local/lib/python3.8/site-packages (from rioxarray) (1.2.10) Requirement already satisfied: pyproj>=2.2 in /usr/lib/python3/dist-packages (from rioxarray) (3.2.1) Requirement already satisfied: pandas>=1.1 in ./.local/lib/python3.8/site-packages (from xarray>=0.17->rioxarray) (1.4.1) Requirement already satisfied: numpy>=1.18 in ./.local/lib/python3.8/site-packages (from xarray>=0.17->rioxarray) (1.21.5) Requirement already satisfied: click-plugins in /usr/lib/python3/dist-packages (from rasterio>=1.1.1->rioxarray) (1.1.1) Requirement already satisfied: cligj>=0.5 in /usr/lib/python3/dist-packages (from rasterio>=1.1.1->rioxarray) (0.5.0) Requirement already satisfied: attrs in /usr/lib/python3/dist-packages (from rasterio>=1.1.1->rioxarray) (19.3.0) Requirement already satisfied: certifi in /usr/lib/python3/dist-packages (from rasterio>=1.1.1->rioxarray) (2019.11.28) Requirement already satisfied: click>=4.0 in /usr/lib/python3/dist-packages (from rasterio>=1.1.1->rioxarray) (7.0) Requirement already satisfied: affine in ./.local/lib/python3.8/site-packages (from rasterio>=1.1.1->rioxarray) (2.3.0) Requirement already satisfied: snuggs>=1.4.1 in ./.local/lib/python3.8/site-packages (from rasterio>=1.1.1->rioxarray) (1.4.7) Requirement already satisfied: setuptools in /usr/lib/python3/dist-packages (from rasterio>=1.1.1->rioxarray) (45.2.0) Requirement already satisfied: python-dateutil>=2.8.1 in ./.local/lib/python3.8/site-packages (from pandas>=1.1->xarray>=0.17->rioxarray) (2.8.2) Requirement already satisfied: pytz>=2020.1 in ./.local/lib/python3.8/site-packages (from pandas>=1.1->xarray>=0.17->rioxarray) (2021.3) Requirement already satisfied: pyparsing>=2.1.6 in /usr/lib/python3/dist-packages (from snuggs>=1.4.1->rasterio>=1.1.1->rioxarray) (2.4.6) Requirement already satisfied: six>=1.5 in /usr/lib/python3/dist-packages (from python-dateutil>=2.8.1->pandas>=1.1->xarray>=0.17->rioxarray) (1.14.0) Building wheels for collected packages: rioxarray Building wheel for rioxarray (PEP 517) ... done Created wheel for rioxarray: filename=rioxarray-0.10.3-py3-none-any.whl size=55624 sha256=925199c830a54ca5e9b02e89060e822e27014db5cbe601fd6b513d106fe66687 Stored in directory: /home/dbb/.cache/pip/wheels/42/71/40/298b7df47153454b8eb3ef8e5441dafa413e5a2d7ac1832b17 Successfully built rioxarray Installing collected packages: rioxarray Successfully installed rioxarray-0.10.3
OSM software stack
osm2pgsql and libosmium
# jammy universe Thu May 26 07:55:03 PM PDT 2022 osm2pgsql 1.6.0+ds-1 libosmium2-dev Version: 2.18.0-1 Sat 26 Feb 2022 07:10:31 PM PST # ubuntugis-unstable focal osm2pgsql 1.3.0+ds-1~focal2 # git repo osm2pgsql 1.6 lonvia committed on Jan 24 2022 osm2pgsql 1.5.1 Thu Jul 29 09:49:35 2021 +0200 # osm2pgsql cmake variables set PROJ6_INCLUDE_DIR /usr/include PROJ_LIBRARY /usr/lib/x86_64-linux-gnu/libproj.so WITH_LUA ON EXTERNAL_LIBOSMIUM FALSE # from osm2pgsql/contrib/libosmium/ LIBOSMIUM_VERSION_STRING "2.17.0" $ apt show libosmium2-dev => 2.17.2-1~focal0 ## the result of apt installing Universe python3-pyosmium 2.15.3-1build2 $ osmium --version => osmium version 1.11.1, libosmium version 2.15.4 so, that is behind slightly from 2.17.x osmium headers ## rebuild osm2pgsql 1.6.0, better ! $ osm2pgsql --version 2022-02-26 20:14:19 osm2pgsql version 1.6.0 Build: Debug Compiled using the following library versions: Libosmium 2.17.3 Proj [API 6] 8.2.0 Lua 5.3.3 $ sudo make install ... [ 95%] Built target osm2pgsql_lib [100%] Built target osm2pgsql Install the project... -- Install configuration: "Debug" -- Installing: /usr/local/bin/osm2pgsql -- Installing: /usr/local/bin/osm2pgsql-replication -- Installing: /usr/local/share/man/man1/osm2pgsql-replication.1 -- Installing: /usr/local/share/osm2pgsql/default.style -- Installing: /usr/local/share/osm2pgsql/empty.style -- Installing: /usr/local/share/man/man1/osm2pgsql.1
OSMnx in tutorial https://pygis.io/docs/d_access_osm.html code https://pypi.org/project/osmnx/#files
## osm2pgsql FLEX layout post-processing via LUA ./flex-config/ route-relations.lua unitable.lua geometries.lua data-types.lua attributes.lua compatible.lua simple.lua places.lua generic.lua with-schema.lua ./tests/data/ test_output_flex_multigeom_polygon.lua test_output_flex_way.lua test_output_flex_area_3857.lua test_output_flex_attr.lua test_output_flex_stage2.lua test_output_flex_nocluster.lua test_output_flex_multigeom_multipolygon_split.lua test_output_flex_multigeom.lua test_output_flex_multigeom_multipolygon.lua test_output_flex_nodes.lua test_output_flex_area_4326.lua test_output_flex_relation_combinations.lua test_output_flex_nogeom.lua test_output_flex_area.lua test_output_flex_lua_fail.lua test_output_flex_bbox.lua test_output_flex_types.lua test_output_flex_area_mix.lua test_output_flex_relation_changes.lua test_output_flex_schema.lua test_output_flex_multigeom_geometry_split.lua test_output_flex_stage2_alt.lua test_output_flex_uni.lua test_output_flex.lua test_output_flex_validgeom.lua test_output_flex_line.lua test_output_flex_invalid_geom.lua test_output_flex_multigeom_geometry.lua test_output_flex_relations.lua
## a full list of osmium verbs osmium-add-locations-to-ways osmium-export osmium-merge-changes osmium-apply-changes osmium-extract osmium-query-locations-index osmium-cat osmium-file-formats osmium-renumber osmium-changeset-filter osmium-fileinfo osmium-show osmium-check-refs osmium-getid osmium-sort osmium-create-locations-index osmium-getparents osmium-tags-filter osmium-derive-changes osmium-index-types osmium-time-filter osmium-diff osmium-merge
Focal Jupyter Overview
Sat 19 Feb 2022 07:18:48 PM PST $ jupyter --version jupyter core : 4.6.3 jupyter-notebook : 6.0.3 qtconsole : not installed ipython : 7.13.0 ipykernel : 5.2.0 jupyter client : 6.1.2 jupyter lab : not installed nbconvert : 5.6.1 ipywidgets : 6.0.0 nbformat : 5.0.4 traitlets : 4.3.3 ##------------------------------- Python version: 3.8.10 (default, Nov 26 2021, 20:14:08) [GCC 9.3.0] pandas version: 0.25.3 <== a weak spot in this setup matplotlib version: 3.1.2 NumPy version: 1.17.4 SciPy version: 1.3.3 IPython version: 7.13.0 scikit-learn version: 1.0.2 ##----------------------------------------- dbb@focalk:~$ ipython3 Python 3.8.10 (default, Nov 26 2021, 20:14:08) Type 'copyright', 'credits' or 'license' for more information IPython 7.13.0 -- An enhanced Interactive Python. Type '?' for help. In [1]: import sklearn In [2]: from sklearn import show_versions In [3]: show_versions() System: python: 3.8.10 (default, Nov 26 2021, 20:14:08) [GCC 9.3.0] executable: /usr/bin/python3 machine: Linux-5.13.0-30-generic-x86_64-with-glibc2.29 Python dependencies: pip: 20.0.2 setuptools: 45.2.0 sklearn: 1.0.2 numpy: 1.17.4 scipy: 1.3.3 Cython: 0.29.14 pandas: 0.25.3 <== a weak spot in this setup matplotlib: 3.1.2 joblib: 1.1.0 threadpoolctl: 3.1.0 Built with OpenMP: True -- dbb@focalk:~$ jupyter --paths config: /home/dbb/.jupyter /usr/local/etc/jupyter /etc/jupyter data: /home/dbb/.local/share/jupyter /usr/local/share/jupyter /usr/share/jupyter runtime: /home/dbb/.local/share/jupyter/runtime
Focal APT Repos
dbb@focalk:/etc/apt$ cat sources.list # Automatically generated by Calamares on 2022-01-02. # Lines starting with "deb" are mandatory, while lines starting with "deb-src" # are for more detailed package information. ... ------------------------- dbb@focalk:/etc/apt$ cat sources.list.d/ubuntugis-ubuntu-ubuntugis-unstable-focal.list deb http://ppa.launchpad.net/ubuntugis/ubuntugis-unstable/ubuntu focal main deb-src http://ppa.launchpad.net/ubuntugis/ubuntugis-unstable/ubuntu focal main
eo-learn pip Fix-It Session
eolearn -- aprox. of python3 dependancies
import : pandas as pd : geopandas as gpd : shapely. geometry, ops, wkt : rasterio. features, transform, warp : skimage. feature, filters.rank, morphology, segmentation : boto3, cv2 : fiona : graphviz : ------------------------------------------ : abc, attr, base64 : collections, concurrent.futures : dataclasses, datetime as dt : dateutil, dateutil.parser : fs, functools, gzip : importlib, inspect, itertools as it : json, logging, multiprocessing, os : pickle, ray, re, registration : tempfile, threading, time, traceback : unittest.mock as mock, uuid, warnings : -------------------------- ##----------------------------------------------------------------- $ pip install --user --upgrade --upgrade-strategy=only-if-needed pandas Collecting pandas Downloading pandas-1.4.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.7 MB) | | 11.7 MB 79 kB/s Collecting pytz>=2020.1 Downloading pytz-2021.3-py2.py3-none-any.whl (503 kB) | | 503 kB 260 kB/s Collecting python-dateutil>=2.8.1 Downloading python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) | | 247 kB 210 kB/s Collecting numpy>=1.18.5; platform_machine != "aarch64" and platform_machine != "arm64" and python_version < "3.10" Downloading numpy-1.22.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.8 MB) | | 16.8 MB 11 kB/s Requirement already satisfied, skipping upgrade: six>=1.5 in /usr/lib/python3/dist-packages (from python-dateutil>=2.8.1->pandas) (1.14.0) ERROR: sentinelhub 3.4.4 has requirement pillow<=8.4.0,>=8.3.2, but you'll have pillow 7.0.0 which is incompatible. ERROR: scikit-image 0.19.2 has requirement scipy>=1.4.1, but you'll have scipy 1.3.3 which is incompatible. ERROR: numba 0.55.1 has requirement numpy<1.22,>=1.18, but you'll have numpy 1.22.2 which is incompatible. ERROR: imageio 2.16.0 has requirement pillow>=8.3.2, but you'll have pillow 7.0.0 which is incompatible. Installing collected packages: pytz, python-dateutil, numpy, pandas Successfully installed numpy-1.22.2 pandas-1.4.1 python-dateutil-2.8.2 pytz-2021.3 $ pip install --user --upgrade --upgrade-strategy=only-if-needed scikit-image Requirement already up-to-date: scikit-image in ./.local/lib/python3.8/site-packages (0.19.2) Requirement already satisfied, skipping upgrade: imageio>=2.4.1 in ./.local/lib/python3.8/site-packages (from scikit-image) (2.16.0) Requirement already satisfied, skipping upgrade: packaging>=20.0 in /usr/lib/python3/dist-packages (from scikit-image) (20.3) Collecting scipy>=1.4.1 Downloading scipy-1.8.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (41.6 MB) | | 41.6 MB 20 kB/s Requirement already satisfied, skipping upgrade: pillow!=7.1.0,!=7.1.1,!=8.3.0,>=6.1.0 in /usr/lib/python3/dist-packages (from scikit-image) (7.0.0) Requirement already satisfied, skipping upgrade: numpy>=1.17.0 in ./.local/lib/python3.8/site-packages (from scikit-image) (1.22.2) Requirement already satisfied, skipping upgrade: PyWavelets>=1.1.1 in ./.local/lib/python3.8/site-packages (from scikit-image) (1.2.0) Requirement already satisfied, skipping upgrade: networkx>=2.2 in ./.local/lib/python3.8/site-packages (from scikit-image) (2.6.3) Requirement already satisfied, skipping upgrade: tifffile>=2019.7.26 in ./.local/lib/python3.8/site-packages (from scikit-image) (2022.2.9) Installing collected packages: scipy Successfully installed scipy-1.8.0 $ pip install --user --upgrade --upgrade-strategy=only-if-needed imageio Requirement already up-to-date: imageio in ./.local/lib/python3.8/site-packages (2.16.0) Requirement already satisfied, skipping upgrade: numpy>=1.20.0 in ./.local/lib/python3.8/site-packages (from imageio) (1.22.2) Collecting pillow>=8.3.2 Downloading Pillow-9.0.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.3 MB) | | 4.3 MB 99 kB/s ERROR: sentinelhub 3.4.4 has requirement pillow<=8.4.0,>=8.3.2, but you'll have pillow 9.0.1 which is incompatible. Installing collected packages: pillow Successfully installed pillow-9.0.1 $ pip install --user --upgrade --upgrade-strategy=only-if-needed numba Requirement already up-to-date: numba in ./.local/lib/python3.8/site-packages (0.55.1) Collecting numpy<1.22,>=1.18 Downloading numpy-1.21.5-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB) | | 15.7 MB 361 kB/s Requirement already satisfied, skipping upgrade: setuptools in /usr/lib/python3/dist-packages (from numba) (45.2.0) Requirement already satisfied, skipping upgrade: llvmlite<0.39,>=0.38.0rc1 in ./.local/lib/python3.8/site-packages (from numba) (0.38.0) ERROR: sentinelhub 3.4.4 has requirement pillow<=8.4.0,>=8.3.2, but you'll have pillow 9.0.1 which is incompatible. Installing collected packages: numpy Attempting uninstall: numpy Found existing installation: numpy 1.22.2 Uninstalling numpy-1.22.2: Successfully uninstalled numpy-1.22.2 Successfully installed numpy-1.21.5 $ pip install --user --upgrade --upgrade-strategy=only-if-needed sentinelhub Requirement already up-to-date: sentinelhub in ./.local/lib/python3.8/site-packages (3.4.4) Collecting pillow<=8.4.0,>=8.3.2 Downloading Pillow-8.4.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.1 MB) | | 3.1 MB 43 kB/s Installing collected packages: pillow Attempting uninstall: pillow Found existing installation: Pillow 9.0.1 Uninstalling Pillow-9.0.1: Successfully uninstalled Pillow-9.0.1 Successfully installed pillow-8.4.0 $ pip install --user --upgrade --upgrade-strategy=only-if-needed eo-learn Requirement already up-to-date: eo-learn in ./.local/lib/python3.8/site-packages (1.0.0) $ pip install --user --upgrade --upgrade-strategy=only-if-needed ipyleaflet Collecting ipyleaflet Downloading ipyleaflet-0.15.0-py2.py3-none-any.whl (3.3 MB) | | 3.3 MB 364 kB/s Collecting traittypes<3,>=0.2.1 Downloading traittypes-0.2.1-py2.py3-none-any.whl (8.6 kB) Collecting xyzservices>=2021.8.1 Downloading xyzservices-2022.2.0-py3-none-any.whl (35 kB) Collecting ipywidgets<8,>=7.6.0 Downloading ipywidgets-7.6.5-py2.py3-none-any.whl (121 kB) | | 121 kB 338 kB/s Requirement already satisfied, skipping upgrade: traitlets>=4.2.2 in /usr/lib/python3/dist-packages (from traittypes<3,>=0.2.1->ipyleaflet) (4.3.3) Requirement already satisfied, skipping upgrade: ipykernel>=4.5.1 in /usr/lib/python3/dist-packages (from ipywidgets<8,>=7.6.0->ipyleaflet) (5.2.0) Requirement already satisfied, skipping upgrade: ipython>=4.0.0; python_version >= "3.3" in /usr/lib/python3/dist-packages (from ipywidgets<8,>=7.6.0->ipyleaflet) (7.13.0) Requirement already satisfied, skipping upgrade: ipython-genutils~=0.2.0 in /usr/lib/python3/dist-packages (from ipywidgets<8,>=7.6.0->ipyleaflet) (0.2.0) Collecting jupyterlab-widgets>=1.0.0; python_version >= "3.6" Downloading jupyterlab_widgets-1.0.2-py3-none-any.whl (243 kB) | | 243 kB 376 kB/s Collecting widgetsnbextension~=3.5.0 Downloading widgetsnbextension-3.5.2-py2.py3-none-any.whl (1.6 MB) | | 1.6 MB 359 kB/s Requirement already satisfied, skipping upgrade: nbformat>=4.2.0 in /usr/lib/python3/dist-packages (from ipywidgets<8,>=7.6.0->ipyleaflet) (5.0.4) Requirement already satisfied, skipping upgrade: pexpect in /usr/lib/python3/dist-packages (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets<8,>=7.6.0->ipyleaflet) (4.6.0) Requirement already satisfied, skipping upgrade: notebook>=4.4.1 in /usr/lib/python3/dist-packages (from widgetsnbextension~=3.5.0->ipywidgets<8,>=7.6.0->ipyleaflet) (6.0.3) Installing collected packages: traittypes, xyzservices, jupyterlab-widgets, widgetsnbextension, ipywidgets, ipyleaflet Successfully installed ipyleaflet-0.15.0 ipywidgets-7.6.5 jupyterlab-widgets-1.0.2 traittypes-0.2.1 widgetsnbextension-3.5.2 xyzservices-2022.2.0 ##jupyter nbextension enable --py --sys-prefix{?} ipyleaflet # can be skipped for notebook 5.3 and above
R setup
-- R language example ''Explainable Machine Learning for Land Cover Classification'' by Courage K. 2021 <pre> # Load the libraries example code from aigeolabs.com rm(list=ls()) library(sf) # represents simple features as native R objects library(rgdal) # interface to the “Geospatial Data Abstraction Library (GDAL) library(raster) # provides important functions for importing and handling raster data library(rasterVis) # provides functions to display raster objects library(dplyr) # provides basic data transformation functions library(ggplot2) # provides extension for visualizations library(mapview) # provides functions to visualize geospatial data library(randomForest) # implements Breiman’s random forest (RF) algorithm library(kernlab) # implements support vector machine (SVM) algorithm library(corrplot) # provides graphical display of a correlation matrix library(iml) # Keras-base tools for analyzing machine learning models library(caret) # machine learning helper ##--------------
OSGeoLive install_R.sh ver14 apt-get --assume-yes install r-base-core r-cran-sp r-cran-rpostgresql r-cran-udunits2 \ r-cran-ggplot2 r-cran-sf r-cran-lwgeom r-cran-spdata r-cran-rgdal r-cran-maptools
osgeolive 10 patch
in 2016, after being alerted -LINK- , I used pip
to upgrade ipywidgets on the OSGeo-Live 10.0 base system.
The following is a modified patch file showing the changes in Python 2.7:
## Major components, version changed -ipykernel==4.2.2 +ipykernel==4.5.2 ... -ipython==4.0.2 +ipython==5.1.0 -ipywidgets==5.1.5 +ipywidgets==5.2.2 -jupyter-client==4.1.1 +jupyter-client==4.4.0 jupyter-console==4.1.0 -jupyter-core==4.0.6 +jupyter-core==4.2.1 -notebook==4.2.1 +notebook==4.3.0 -nbconvert==4.1.0 -nbformat==4.0.1 +nbconvert==5.0.0 +nbformat==4.2.0 +html5lib==0.9999999 -ptyprocess==0.5 +ptyprocess==0.5.1 -pexpect==4.0.1 -pickleshare==0.5 +pexpect==4.2.1 +pickleshare==0.7.4 -decorator==4.0.6 +decorator==4.0.10 ##-- misc other additions -- +backports-abc==0.5 +backports.shutil-get-terminal-size==1.0.0 +bleach==1.5.0 +certifi==2016.9.26 +configparser==3.5.0 -enum34==1.1.2 +entrypoints==0.2.2 +enum34==1.1.6 -mistune==0.7.1 +mistune==0.7.3 +pandocfilters==1.4.1 +pathlib2==2.1.0 +prompt-toolkit==1.0.9 -Pygments==2.1 +Pygments==2.1.3 -pyzmq==15.2.0 +pyzmq==16.0.2 +testpath==0.3 -tornado==4.2.1 -traitlets==4.1.0 +tornado==4.4.2 +traitlets==4.3.1 +wcwidth==0.1.7 -widgetsnbextension==1.2.3 +widgetsnbextension==1.2.6 ##-- misc other python libs (unchanged) anyjson==0.3.3 Biggus==0.13.0 Cartopy==0.14.2 celery==3.1.20 cf-units==1.0.0 colorama==0.3.7 cycler==0.9.0 defer==1.0.6 descartes==1.0.1 filemagic==1.6 Fiona==1.6.3 Iris==1.9.2 imposm==2.6.0 imposm.parser==1.0.7 ipyleaflet==0.2.0 jsonschema==2.5.1 meld==3.14.2 ModestMaps==1.4.6 netCDF4==1.2.4 Nik4==1.6.0 numpy==1.11.0 osmapi==0.6.2 OWSLib==0.10.3 pandas==0.17.1 psutil==3.4.2 psycopg2==2.6.1 pykml==0.1.1 pywps==3.2.5 rasterio==0.31.0 TileStache==1.49.8
Python Packages All
jammy Snapshot python install
osgeolive rc1 python3_all APScheduler==0.0.0 Automat==20.2.0 Babel==2.8.0 Brotli==1.0.9 Cartopy==0.0.0 Cheetah3==3.2.6 Deprecated==1.2.13 Django==2.2.24 EOxServer==1.1.2 Faker==0.9.3 Fiona==1.8.21 Flask==2.0.1 GDAL==3.4.3 GeoAlchemy2==0.10.2 GeoNode==3.3.2.post2 HeapDict==1.0.1 Jinja2==3.0.3 Mako==1.1.3 MapProxy==1.15.1 Markdown==3.3.6 MarkupSafe==2.0.1 Nik4==1.7.0 OWSLib==0.25.0 Pillow==9.0.1 PyGObject==3.42.1 PyHamcrest==2.0.2 PyJWT==2.3.0 PyNaCl==1.5.0 PyOpenGL==3.1.5 PyQt5-sip==12.9.1 PyQt5==5.15.6 PyYAML==5.4.1 Pygments==2.11.2 QScintilla==2.11.6 Rtree==0.9.7 SQLAlchemy==1.4.31 SecretStorage==3.3.1 Send2Trash==1.8.1b0 Shapely==1.8.0 Twisted==22.1.0 Unidecode==1.3.3 Werkzeug==2.0.2 adal==1.2.2 affine==2.3.0 aiohttp==3.8.1 aioredis==1.3.1 aiosignal==1.2.0 amqp==5.0.9 anyjson==0.3.3 appdirs==1.4.4 apt-xapian-index==0.49 argon2-cffi==21.1.0 async-timeout==4.0.1 attrs==21.2.0 avro==1.11.0 azure-agrifood-farming==1.0.0b1 azure-ai-anomalydetector==3.0.0b3 azure-ai-formrecognizer==3.2.0b2 azure-ai-language-conversations==1.0.0b1 azure-ai-language-questionanswering==1.0.0 azure-ai-metricsadvisor==1.0.1 azure-ai-textanalytics==5.2.0b3 azure-ai-translation-document==1.0.0b6 azure-appconfiguration==1.3.0 azure-applicationinsights==0.1.0 azure-batch==11.0.0 azure-cognitiveservices-anomalydetector==0.3.0 azure-cognitiveservices-formrecognizer==0.1.1 azure-cognitiveservices-knowledge-qnamaker==0.3.0 azure-cognitiveservices-language-luis==0.7.0 azure-cognitiveservices-language-spellcheck==2.0.0 azure-cognitiveservices-language-textanalytics==0.2.0 azure-cognitiveservices-personalizer==0.1.0 azure-cognitiveservices-search-autosuggest==0.2.0 azure-cognitiveservices-search-customimagesearch==0.2.0 azure-cognitiveservices-search-customsearch==0.3.0 azure-cognitiveservices-search-entitysearch==2.0.0 azure-cognitiveservices-search-imagesearch==2.0.0 azure-cognitiveservices-search-newssearch==2.0.0 azure-cognitiveservices-search-videosearch==2.0.0 azure-cognitiveservices-search-visualsearch==0.2.0 azure-cognitiveservices-search-websearch==2.0.0 azure-cognitiveservices-vision-computervision==0.9.0 azure-cognitiveservices-vision-contentmoderator==1.0.0 azure-cognitiveservices-vision-customvision==3.1.0 azure-cognitiveservices-vision-face==0.5.0 azure-common==1.1.28 azure-communication-chat==1.1.0 azure-communication-identity==1.0.1 azure-communication-networktraversal==1.0.0b1 azure-communication-phonenumbers==1.0.1 azure-communication-sms==1.0.1 azure-confidentialledger==1.0.0b1 azure-containerregistry==1.0.0b7 azure-core==1.20.1 azure-data-tables==12.1.1 azure-digitaltwins-core==1.1.0 azure-eventgrid==4.7.0 azure-eventhub-checkpointstoreblob-aio==1.1.4 azure-eventhub-checkpointstoreblob==1.1.4 azure-eventhub-checkpointstoretable==1.0.0b1 azure-eventhub==5.6.2 azure-graphrbac==0.61.1 azure-identity==1.7.1 azure-iot-deviceupdate==1.0.0b1 azure-iot-modelsrepository==1.0.0b2 azure-keyvault-administration==4.1.0b2 azure-keyvault-certificates==4.4.0b2 azure-keyvault-keys==4.5.0b5 azure-keyvault-secrets==4.4.0b2 azure-keyvault==4.1.0 azure-loganalytics==0.1.0 azure-media-analytics-edge==1.0.0b1 azure-media-videoanalyzer-edge==1.0.0b3 azure-messaging-webpubsubservice==1.0.0b3 azure-mgmt-advisor==9.0.0 azure-mgmt-agfood==1.0.0b1 azure-mgmt-agrifood==1.0.0b1 azure-mgmt-alertsmanagement==1.0.0 azure-mgmt-apimanagement==2.1.0 azure-mgmt-appconfiguration==2.0.0 azure-mgmt-applicationinsights==1.0.0 azure-mgmt-appplatform==6.1.0 azure-mgmt-attestation==1.0.0 azure-mgmt-authorization==2.0.0 azure-mgmt-automanage==1.0.0b2 azure-mgmt-automation==1.1.0b1 azure-mgmt-avs==7.0.0b1 azure-mgmt-azureadb2c==1.0.0b1 azure-mgmt-azurearcdata==1.0.0 azure-mgmt-azurestack==1.0.0 azure-mgmt-azurestackhci==6.1.0b1 azure-mgmt-baremetalinfrastructure==1.0.0 azure-mgmt-batch==16.0.0 azure-mgmt-batchai==7.0.0b1 azure-mgmt-billing==6.0.0 azure-mgmt-botservice==1.0.0 azure-mgmt-cdn==11.0.0 azure-mgmt-changeanalysis==1.0.0 azure-mgmt-chaos==1.0.0b2 azure-mgmt-cognitiveservices==12.0.0 azure-mgmt-commerce==6.0.0 azure-mgmt-communication==1.0.0 azure-mgmt-compute==23.1.0 azure-mgmt-confidentialledger==1.0.0b1 azure-mgmt-confluent==2.0.0b1 azure-mgmt-consumption==8.0.0 azure-mgmt-containerinstance==9.1.0 azure-mgmt-containerregistry==8.2.0 azure-mgmt-containerservice==16.3.0 azure-mgmt-core==1.3.0 azure-mgmt-cosmosdb==7.0.0b2 azure-mgmt-costmanagement==3.0.0 azure-mgmt-customproviders==1.0.0 azure-mgmt-databox==1.0.0 azure-mgmt-databoxedge==1.0.0 azure-mgmt-databricks==1.1.0b1 azure-mgmt-datadog==2.0.0 azure-mgmt-datafactory==2.0.0 azure-mgmt-datalake-analytics==0.6.0 azure-mgmt-datalake-store==1.0.0 azure-mgmt-datamigration==10.0.0 azure-mgmt-dataprotection==1.0.0b1 azure-mgmt-datashare==1.0.0 azure-mgmt-deploymentmanager==1.0.0 azure-mgmt-deviceupdate==1.0.0b3 azure-mgmt-devspaces==1.0.0b1 azure-mgmt-devtestlabs==9.0.0 azure-mgmt-digitaltwins==6.0.0 azure-mgmt-dns==8.0.0 azure-mgmt-documentdb==0.1.3 azure-mgmt-edgegateway==0.1.0 azure-mgmt-edgeorder==1.0.0b1 azure-mgmt-elastic==1.0.0 azure-mgmt-eventgrid==9.0.0 azure-mgmt-eventhub==10.0.0 azure-mgmt-extendedlocation==1.0.0 azure-mgmt-fluidrelay==1.0.0b1 azure-mgmt-frontdoor==1.0.0 azure-mgmt-guestconfig==1.0.0b1 azure-mgmt-hanaonazure==1.0.0 azure-mgmt-hdinsight==9.0.0 azure-mgmt-healthbot==1.0.0b1 azure-mgmt-healthcareapis==1.1.0b1 azure-mgmt-hybridcompute==7.0.0 azure-mgmt-hybridkubernetes==1.1.0 azure-mgmt-hybridnetwork==1.0.0 azure-mgmt-imagebuilder==1.0.0b1 azure-mgmt-iotcentral==9.0.0b1 azure-mgmt-iothub==2.1.0 azure-mgmt-iothubprovisioningservices==1.0.0 azure-mgmt-keyvault==9.2.0 azure-mgmt-kubernetesconfiguration==1.0.0b1 azure-mgmt-kusto==2.1.0 azure-mgmt-labservices==1.0.0 azure-mgmt-loganalytics==11.0.0 azure-mgmt-logic==9.0.0 azure-mgmt-logz==1.0.0 azure-mgmt-machinelearningcompute==1.0.0b1 azure-mgmt-machinelearningservices==1.0.0 azure-mgmt-maintenance==2.0.0 azure-mgmt-managedservices==6.0.0 azure-mgmt-managementgroups==1.0.0 azure-mgmt-managementpartner==1.0.0 azure-mgmt-maps==2.0.0 azure-mgmt-marketplaceordering==1.1.0 azure-mgmt-media==8.0.0 azure-mgmt-mixedreality==1.0.0 azure-mgmt-monitor==2.0.0 azure-mgmt-msi==6.0.0b1 azure-mgmt-netapp==5.1.0 azure-mgmt-network==19.2.0 azure-mgmt-notificationhubs==7.0.0 azure-mgmt-operationsmanagement==1.0.0 azure-mgmt-peering==1.0.0 azure-mgmt-policyinsights==1.1.0b1 azure-mgmt-portal==1.0.0 azure-mgmt-powerbidedicated==1.0.0 azure-mgmt-powerbiembedded==2.0.0 azure-mgmt-privatedns==1.0.0 azure-mgmt-purview==1.0.0 azure-mgmt-quantum==1.0.0b2 azure-mgmt-quota==1.0.0b2 azure-mgmt-rdbms==10.0.0 azure-mgmt-recoveryservices==2.0.0 azure-mgmt-recoveryservicesbackup==3.0.0 azure-mgmt-recoveryservicessiterecovery==1.0.0b1 azure-mgmt-redhatopenshift==1.0.0 azure-mgmt-redis==13.0.0 azure-mgmt-redisenterprise==1.0.0 azure-mgmt-regionmove==1.0.0b1 azure-mgmt-relay==1.1.0 azure-mgmt-reservations==1.0.0 azure-mgmt-resource==20.0.0 azure-mgmt-resourcegraph==8.1.0b1 azure-mgmt-resourcehealth==1.0.0b1 azure-mgmt-resourcemover==1.1.0b2 azure-mgmt-scheduler==7.0.0b1 azure-mgmt-search==8.0.0 azure-mgmt-security==2.0.0b1 azure-mgmt-securityinsight==1.0.0b1 azure-mgmt-serialconsole==1.0.0 azure-mgmt-servermanager==2.0.0 azure-mgmt-servicebus==7.1.0 azure-mgmt-servicefabric==2.0.0 azure-mgmt-servicefabricmanagedclusters==1.0.0 azure-mgmt-servicelinker==1.0.0b1 azure-mgmt-signalr==1.0.0 azure-mgmt-sql==3.0.1 azure-mgmt-sqlvirtualmachine==1.0.0b1 azure-mgmt-storage==19.0.0 azure-mgmt-storagecache==1.1.0 azure-mgmt-storageimportexport==1.0.0b1 azure-mgmt-storagepool==1.0.0 azure-mgmt-storagesync==1.0.0 azure-mgmt-streamanalytics==1.0.0rc1 azure-mgmt-subscription==1.0.0 azure-mgmt-support==6.0.0 azure-mgmt-synapse==2.1.0b2 azure-mgmt-testbase==1.0.0b1 azure-mgmt-timeseriesinsights==1.0.0 azure-mgmt-trafficmanager==1.0.0b1 azure-mgmt-videoanalyzer==1.0.0b3 azure-mgmt-vmwarecloudsimple==1.0.0b1 azure-mgmt-web==5.0.0 azure-mgmt-webpubsub==1.0.0 azure-mgmt-workloadmonitor==1.0.0b2 azure-mixedreality-authentication==1.0.0b1 azure-monitor-opentelemetry-exporter==1.0.0b6 azure-monitor-query==1.0.1 azure-purview-administration==1.0.0b2 azure-purview-catalog==1.0.0b3 azure-purview-scanning==1.0.0b3 azure-schemaregistry-avroserializer==1.0.0b4 azure-schemaregistry==1.0.0 azure-search-documents==11.3.0b5 azure-security-attestation==1.0.1 azure-servicebus==7.4.0 azure-servicefabric==8.0.0.0 azure-servicemanagement-legacy==0.20.7 azure-storage-blob-changefeed==12.0.0b3 azure-storage-blob==12.9.0 azure-storage-file-datalake==12.5.0 azure-storage-file-share==12.6.0 azure-storage-queue==12.1.6 azure-synapse-accesscontrol==0.8.0 azure-synapse-artifacts==0.10.0 azure-synapse-managedprivateendpoints==0.5.0 azure-synapse-monitoring==0.3.0 azure-synapse-spark==0.8.0 azure-synapse==0.1.1 azure-template==0.0.18b3 backcall==0.2.0 bcrypt==3.2.0 beautifulsoup4==4.10.0 billiard==3.6.4.0 bleach==4.1.0 blinker==1.4 boto3==1.20.34 botocore==1.23.34 branca==0.4.2 cachetools==5.0.0 celery==5.2.3 certifi==2020.6.20 cftime==1.5.2 chardet==4.0.0 charset-normalizer==2.0.6 click-didyoumean==0.0.3 click-plugins==1.1.1 click-repl==0.2.0 click==8.0.3 cligj==0.7.2 cloudpickle==2.0.0 colorama==0.4.4 command-not-found==0.3 constantly==15.1.0 coverage==6.2 croniter==1.0.15 cryptography==3.4.8 cupshelpers==1.0 cycler==0.11.0 dask==2022.1.0+dfsg datacube==0.0.0 dbus-python==1.2.18 decorator==4.4.2 defer==1.0.6 defusedxml==0.7.1 deprecation==2.0.7 descartes==1.1.0 distributed==2022.1.0+ds.1 distro-info===1.1build1 distro==1.7.0 dj-database-url==0.5.0 dj-pagination==2.5.0 django-allauth==0.47.0 django-appconf==1.0.3 django-autocomplete-light==3.5.1 django-bootstrap3-datetimepicker-2==2.8.2 django-celery-beat==2.2.1 django-celery-results==2.0.0 django-cors-headers==3.11.0 django-downloadview==2.3.0 django-filter==2.4.0 django-floppyforms==1.9.0 django-forms-bootstrap==3.1.0 django-geonode-mapstore-client==3.3.2 django-grappelli==2.15.1 django-guardian==2.4.0 django-haystack==3.1.1 django-imagekit==4.1.0 django-invitations==1.9.3 django-ipware==4.0.0 django-js-asset==1.2.2 django-jsonfield-backport==1.0.2 django-leaflet==0.27.1 django-markdownify==0.9.1 django-model-utils==0.0.0 django-modeltranslation==0.17.5 django-mptt==0.13.2 django-polymorphic==3.1.0 django-recaptcha==2.0.6 django-storages==1.12.3 django-taggit==2.1.0 django-tastypie==0.14.4 django-timezone-field==5.0 django-tinymce==3.3.0 django-treebeard==4.5.1 django-user-agents==0.4.0 django-uuid-upload-path==1.0.0 django-widget-tweaks==1.4.8 djangorestframework-gis==0.18 djangorestframework-guardian==0.3.0 djangorestframework==3.12.4 dnspython==2.1.0 docker==5.0.3 drf-extensions==0.7.1 drf-spectacular==0.21.1 drf-writable-nested==0.6.3 dynamic-rest==2.0.0 elasticsearch==7.16.2 entrypoints==0.4 ephem==4.1.3 factory-boy==2.11.1 flake8==4.0.1 flaky==3.7.0 folium==0.0.0 fonttools==4.29.1 frozenlist==1.2.0 fs==2.4.12 fsspec==2022.1.0 future==0.18.2 galternatives==1.0.8 geographiclib==1.52 geoip2==2.9.0 geojson==2.5.0 geolinks==0.2.0 geonode-announcements==2.0.2 geonode-avatar==5.0.7 geonode-dialogos==3.0.1 geonode-django-activity-stream==0.10.0 geonode-oauth-toolkit==2.2.2 geonode-user-messages==2.0.2 geopandas==0.10.2 geoserver-restconfig==2.0.7 gisdata==0.5.4 glob2==0.5 gn-arcrest==10.5.4 gn-gsimporter==2.0.1 gps==3.22 greenlet==1.1.2 gunicorn==20.1.0 hiredis==1.0.1 html5lib==1.1 httplib2==0.20.2 humanize==0.0.0 hyperlink==21.0.0 idna==3.3 importlib-metadata==4.6.4 incremental==21.3.0 inflection==0.3.1 iniconfig==1.1.1 invoke==1.4.1 iotop==0.6 ipykernel==6.7.0 ipyleaflet==0.17.0 ipython==7.31.1 ipython_genutils==0.2.0 ipywidgets==6.0.0 iso8601==1.0.2 isodate==0.6.1 itsdangerous==2.1.0 jdcal==1.0 jedi==0.18.0 jeepney==0.7.1 jmespath==0.10.0 joblib==0.17.0 jsonfield==3.1.0 jsonref==0.1 jsonschema==3.2.0 jupyter-client==7.1.2 jupyter-core==4.9.1 jupyter-packaging==0.11.1 jupyterlab-pygments==0.1.2 jwcrypto==1.0 keyring==23.5.0 kiwisolver==1.3.2 kombu==5.2.3 language-selector==0.1 lark-parser==0.12.0 launchpadlib==1.10.16 lazr.restfulclient==0.14.4 lazr.uri==1.0.6 locket==0.2.1 lubuntu-update-notifier==0.4.dev0 lxml==4.8.0 lz4==3.1.3+dfsg mapnik==3.0.23 mappyfile==0.9.7 mapscript==7.6.4 matplotlib-inline==0.1.3 matplotlib==3.5.1 maxminddb==2.0.3 mccabe==0.6.1 mercantile==1.1.5 mock==4.0.3 more-itertools==8.10.0 mpmath==0.0.0 msal-extensions==1.0.0 msal==1.17.0 msgpack==1.0.3 msrest==0.6.21 msrestazure==0.6.4 multidict==5.1.0 munch==2.5.0 nbclient==0.5.6 nbconvert==6.4.0 nbformat==5.1.3 nest-asyncio==1.5.4 netCDF4==1.5.8 netifaces==0.11.0 networkx==2.4 notebook==6.4.8 numpy==1.21.5 oauthlib==3.2.0 osmapi==3.0.0 osmium==3.2.0 packaging==21.3 palettable==3.3.0 pandas==1.3.5 pandocfilters==1.5.0 paramiko==2.9.3 parse-type==0.5.6 parse==1.19.0 parso==0.8.1 partd==1.2.0 pbr==5.8.0 pexpect==4.8.0 pickleshare==0.7.5 pilkit==2.0 pinax-notifications==6.0.0 pinax-ratings==4.0.0 plotly==5.4.0 pluggy==0.13.0 ply==3.11 portalocker==2.2.1 prometheus-client==0.9.0 prompt-toolkit==3.0.28 psutil==5.9.0 psycopg2==2.8.6 ptyprocess==0.7.0 py==1.10.0 pyOpenSSL==21.0.0 pyasn1-modules==0.2.1 pyasn1==0.4.8 pycairo==1.20.1 pycodestyle==2.8.0 pycountry==20.7.3 pycql==0.0.8 pycsw==2.6.1 pycups==2.0.1 pydantic==1.8.2 pyflakes==2.4.0 pygeoapi==0.12.0 pylibmc==1.5.2 pyows==0.2.6 pyparsing==2.4.7 pyproj==3.3.0 pyrsistent==0.18.1 pysal==2.1.0 pyserial==3.5 pyshp==2.2.0 pytest-bdd==3.2.1 pytest-django==3.5.1 pytest==6.2.5 python-apt==2.3.0+ubuntu2 python-crontab==2.6.0 python-dateutil==2.8.1 python-debian===0.1.43ubuntu1 python-etcd==0.4.5 python-memcached==1.58 python-mimeparse==1.6.0 python-slugify==4.0.0 python3-openid==3.2.0 pytz==2022.1 pywps==4.5.1 pyxdg==0.27 pyzmq==22.3.0 rasterio==1.3.0 redis==3.5.3 requests-oauthlib==1.3.0 requests-toolbelt==0.9.1 requests==2.25.1 s3transfer==0.5.0 schema==0.6.7 scikit-learn==0.23.2 scipy==1.8.0 seaborn==0.11.2 selenium==4.0.0a1 service-identity==18.1.0 sherlock==0.3.2 six==1.16.0 smart-open==5.2.1 snuggs==1.4.7 sortedcontainers==2.1.0 soupsieve==2.3.1 sqlparse==0.4.2 sympy==1.9 systemd-python==234 tblib==1.7.0 tenacity==6.3.1 terminado==0.13.1 testpath==0.5.0 threadpoolctl==3.1.0 timeout-decorator==0.5.0 tinydb==3.15.2 toml==0.10.2 tomlkit==0.9.2 toolz==0.11.2 tornado==6.1 tqdm==4.57.0 traitlets==5.1.1 traittypes==0.2.1 typing-extensions==3.10.0.2 tzlocal==2.1 ua-parser==0.10.0 uamqp==1.5.1 ubuntu-advantage-tools==27.7 ubuntu-drivers-common==0.0.0 ufoLib2==0.13.1 ufw==0.36.1 unattended-upgrades==0.1 unicodecsv==0.14.1 unicodedata2==14.0.0 uritemplate==3.0.1 urllib3==1.26.5 usb-creator==0.3.7 user-agents==2.2.0 vine==5.0.0 wadllib==1.3.6 wcwidth==0.2.5 webencodings==0.5.1 websocket-client==1.2.3 websockets==9.1 widgetsnbextension==2.0.0 wrapt==1.13.3 wxPython==4.0.7 xarray==0.16.1 xdg==5 xkit==0.0.0 xmljson==0.1.9 xmltodict==0.12.0 xyzservices==2022.6.0 yarl==1.7.2 zict==2.0.0 zipp==1.0.0 zipstream==1.1.4 zope.interface==5.4.0
Focal Snapshot local
Sat 26 Feb 2022 07:10:31 PM PST $ ls .local/lib/python3.8/site-packages/ | grep info | sed -e 's/\.dist-info//' aenum-3.1.8 affine-2.3.0 appdirs-1.4.4 bolt_python-0.7.1 boto-2.49.0 boto3-1.21.2 botocore-1.24.2 branca-0.4.2 charset_normalizer-2.0.12 dataclasses_json-0.5.6 Deprecated-1.2.13 eo_learn-1.0.0 eo_learn_core-1.0.0 eo_learn_coregistration-1.0.0 eo_learn_features-1.0.0 eo_learn_geometry-1.0.0 eo_learn_io-1.0.0 eo_learn_mask-1.0.0 eo_learn_ml_tools-1.0.0 eo_learn_visualization-1.0.0 folium-0.12.1.post1 fs-2.4.15 fs_s3fs-1.1.1 graphviz-0.19.1 imageio-2.16.0 ipyleaflet-0.15.0 ipywidgets-7.6.5 jmespath-0.10.0 joblib-1.1.0 jupyterlab_widgets-1.0.2 lightgbm-3.3.2 llvmlite-0.38.0 marshmallow-3.14.1 marshmallow_enum-1.5.1 mypy_extensions-0.4.3 networkx-2.6.3 numba-0.55.1 numpy-1.21.5 opencv_contrib_python_headless-4.5.5.62 openeo-0.9.2 pandas-1.4.1 Pillow-8.4.0 python_dateutil-2.8.2 pytz-2021.3 PyWavelets-1.2.0 rasterio-1.2.10 requests-2.27.1 requests_oauthlib-1.3.1 s3transfer-0.5.1 scikit_image-0.19.2 scikit_learn-1.0.2 scipy-1.8.0 sentinelhub-3.4.4 snuggs-1.4.7 threadpoolctl-3.1.0 thunder_python-1.4.2 thunder_registration-1.0.1 tifffile-2022.2.9 tqdm-4.62.3 traittypes-0.2.1 typing_extensions-4.1.1 typing_inspect-0.7.1 utm-0.7.0 widgetsnbextension-3.5.2 wrapt-1.13.3 xarray-0.21.1 xyzservices-2022.2.0