Difference between revisions of "Osgeolive-jupyter"
Jump to navigation
Jump to search
| (70 intermediate revisions by 2 users not shown) | |||
| Line 2: | Line 2: | ||
== Python Libraries Strategy == | == Python Libraries Strategy == | ||
| − | '' | + | ''Fresh priority python3 for the Jupyter Notebooks of 2023'' |
| − | * '''GeoPandas''' (and pySAL) : <code>gpd 0. | + | * '''GeoPandas''' (and pySAL) : <code>gpd 0.12</code>direct link to '''GEOS 3.11''', popular extension to Pandas data science; please recall that pySAL is merging into the GeoPandas project overall; GeoPandas+pySAL use matplotlib graphics base, prefers Folium for web maps (?) |
| − | * '''Numpy''' & '''Pandas''' : <code>np | + | * '''Numpy''' & '''Pandas''' : <code>np 1.21.5</code>,<code>pd 1.3.5</code> fundamental packages |
| − | * PostGIS writing done with '''pyscopg2''' (low-level) or '''geoalchemy2''' (ORM based on sqlalchemy) | + | * PostGIS writing done with '''pyscopg2''' <code>2.9.2</code> (low-level) or '''geoalchemy2''' <code>0.10.2</code> (ORM based on sqlalchemy) |
| − | * '''rasterio''' : modern geoTIFF handling; sophisticated library design; not easy to build from source <code>1. | + | * '''rasterio''' : modern geoTIFF handling; sophisticated library design; not easy to build from source <code>1.3.4</code> |
| − | * '''Shapely''' & '''Fiona''' : direct link to libGEOS/ogr from python; example Notebooks in place <code>Shapely-1.8. | + | * '''Shapely''' & '''Fiona''' : direct link to libGEOS/ogr from python; example Notebooks in place <code>Shapely-1.8.5</code><code> Fiona-1.8.22</code> |
| − | * '''opendatacube''' core and Notebook client examples [https://github.com/opendatacube/datacube-core/releases/tag/1.8. | + | * '''opendatacube''' core and Notebook client examples [https://github.com/opendatacube/datacube-core/releases/tag/1.8.7 v1.8.7 -LINK-] '''odc-geo''' a minimal Opendatacube setup (see below) |
| − | * '''pySTAC''' spatial-temporal analysis standard; opendatacube collaborators [https://github.com/stac-utils/pystac/releases/tag/v1.4.0 v1.4 -LINK-] | + | * '''pySTAC''' spatial-temporal analysis standard; opendatacube collaborators [https://github.com/stac-utils/pystac/releases/tag/v1.4.0 v1.4 -LINK-] updt v1.6 |
* stactools is a collection of interfaces and utilities, TBD from odc soon [https://github.com/stactools-packages -LINK-] | * stactools is a collection of interfaces and utilities, TBD from odc soon [https://github.com/stactools-packages -LINK-] | ||
| Line 22: | Line 22: | ||
* fsspec [https://filesystem-spec.readthedocs.io/en/latest/ -LINK-] | * fsspec [https://filesystem-spec.readthedocs.io/en/latest/ -LINK-] | ||
| − | * '''actinia''' | + | * '''GRASS''' notebooks [https://github.com/OSGeo/grass/tree/main/doc/notebooks -LINK-] [https://gitlab.com/geoharmonizer_inea/odse-workshop-2022/-/tree/main/grass_gis/notebooks -LINK2-] [https://twitter.com/MarkusNeteler/status/1536620657844408322 -TWEET-] |
| + | |||
| + | * '''actinia''' [https://github.com/mundialis/actinia-jupyter/ notebooks] - STAC adaptor [https://github.com/mundialis/actinia-stac-plugin -LINK-] [https://github.com/mundialis/actinia_core updates] | ||
* rioxarray xarray adaptor for GDAL NetCDF [https://corteva.github.io/rioxarray/stable/readme.html -README-] [https://corteva.github.io/rioxarray/stable/installation.html -INSTALL-] | * rioxarray xarray adaptor for GDAL NetCDF [https://corteva.github.io/rioxarray/stable/readme.html -README-] [https://corteva.github.io/rioxarray/stable/installation.html -INSTALL-] | ||
| Line 36: | Line 38: | ||
* '''mapnik''' libmapnik3.1, python3-mapnik : mapnik rendering engine for OSM maps and others <code>libmapnik.so.3.1.0</code> | * '''mapnik''' libmapnik3.1, python3-mapnik : mapnik rendering engine for OSM maps and others <code>libmapnik.so.3.1.0</code> | ||
| − | * ''mapclassify'' : part of pySAL, versions must match with geopandas setup | + | * ''mapclassify'' : part of pySAL, versions must match with geopandas setup [https://pysal.org/mapclassify/ --LINK--] |
| − | * ''lightgbm'' : MSFT python, | + | * ''lightgbm'' : MSFT python, updt ''pip3 install --user --upgrade-strategy=only-if-needed lightgbm'' ; ''v3.3.2'' |
| + | |||
| + | * DASK job lib [https://github.com/dask/dask/tags -LINK-] | ||
* '''inline''' maps ''vs'' '''slippy''' maps : cartopy, other matplotlib variants are inline static; notebook web maps need js libs e.g. ipyleaflet | * '''inline''' maps ''vs'' '''slippy''' maps : cartopy, other matplotlib variants are inline static; notebook web maps need js libs e.g. ipyleaflet | ||
| Line 48: | Line 52: | ||
* Canada Met - Meteorological Service of Canada Open Data User Documentation [https://eccc-msc.github.io/open-data/readme_en/ -LINK-] | * Canada Met - Meteorological Service of Canada Open Data User Documentation [https://eccc-msc.github.io/open-data/readme_en/ -LINK-] | ||
| − | * LiDAR | + | * LiDAR : this is slightly painful since modern commercial GIS is flooded with this tech, delivered by advanced Western companies seeking something novel to sell. Changes to the LASzip licensing have enabled inclusion, but as of today, no Debian maintainer in place, and bas wants PDAL out at this time. [https://lists.debian.org/debian-gis/2022/02/msg00004.html -EMAIL-] [https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1009625 -EMAIL2-] *update* '''PDAL''' via dot-deb is included in ol15 |
* DeepLearning "no" : deep learning has taken over in the modern AI/ML research, for funding and hype, but not on this disk. Please note that the ML libraries on osgeolive are completely useful, accurate and performant today.. no need for a constant and fast Internet connection, nor a compute infrastructure the size of a large naval ship, or special impenetrable models that can only be built by those machines. [http://blog.light42.com/wordpress/?p=3564 -LINK-] Serious and in-demand applications like "facial recognition" are not included here. Many real applications to remote sensing are built using DeepLearning, but those are not available on this disk. Some benefits of not including DeepLearning : no dependencies on tricky GPU libs; not suffering from fast-updates of important ML core libraries; avoid black-box training models, and their disk space; avoid software patent problems in Western Nations. | * DeepLearning "no" : deep learning has taken over in the modern AI/ML research, for funding and hype, but not on this disk. Please note that the ML libraries on osgeolive are completely useful, accurate and performant today.. no need for a constant and fast Internet connection, nor a compute infrastructure the size of a large naval ship, or special impenetrable models that can only be built by those machines. [http://blog.light42.com/wordpress/?p=3564 -LINK-] Serious and in-demand applications like "facial recognition" are not included here. Many real applications to remote sensing are built using DeepLearning, but those are not available on this disk. Some benefits of not including DeepLearning : no dependencies on tricky GPU libs; not suffering from fast-updates of important ML core libraries; avoid black-box training models, and their disk space; avoid software patent problems in Western Nations. | ||
| Line 61: | Line 65: | ||
-- | -- | ||
| − | |||
== Jammy Notes == | == Jammy Notes == | ||
| Line 76: | Line 79: | ||
#-- | #-- | ||
| − | libgeos3. | + | libgeos3.11.1 (libgeos3.11.1) |
| − | libgdal-dev (3. | + | libgdal-dev (3.6.2+dfsg-1~jammy0) |
| − | postgresql-14-postgis-3 (3.2 | + | postgresql-14-postgis-3 (3.3.2+dfsg-1~jammy0) |
| − | PGSQL="140" POSTGIS="3.2 | + | PGSQL="140" POSTGIS="3.3.2" GEOS="3.11.1-CAPI-1.17.0" PROJ="9.1.1" LIBJSON="0.15" |
#-- | #-- | ||
| Line 105: | Line 108: | ||
=== Jupyter jammy Version === | === Jupyter jammy Version === | ||
<pre> | <pre> | ||
| − | + | user@osgeolive:~$ jupyter --version | |
Selected Jupyter core packages... | Selected Jupyter core packages... | ||
IPython : 7.31.1 | IPython : 7.31.1 | ||
| Line 120: | Line 123: | ||
qtconsole : not installed | qtconsole : not installed | ||
traitlets : 5.1.1 | traitlets : 5.1.1 | ||
| − | + | ||
| + | user@osgeolive:~$ jupyter --paths | ||
config: | config: | ||
| − | /home/ | + | /home/user/.jupyter |
| − | /home/ | + | /home/user/.local/etc/jupyter |
/usr/etc/jupyter | /usr/etc/jupyter | ||
/usr/local/etc/jupyter | /usr/local/etc/jupyter | ||
/etc/jupyter | /etc/jupyter | ||
data: | data: | ||
| − | /home/ | + | /home/user/.local/share/jupyter |
/usr/local/share/jupyter | /usr/local/share/jupyter | ||
/usr/share/jupyter | /usr/share/jupyter | ||
runtime: | runtime: | ||
| − | /home/ | + | /home/user/.local/share/jupyter/runtime |
</pre> | </pre> | ||
| − | |||
<pre> | <pre> | ||
| − | + | $ apt-get source python-dask-doc | |
Reading package lists... Done | Reading package lists... Done | ||
| − | + | Picking 'dask' as source package instead of 'python-dask-doc' | |
| − | + | NOTICE: 'dask' packaging is maintained in the 'Git' version control system at: | |
| + | https://salsa.debian.org/python-team/packages/dask.git | ||
| + | Please use: | ||
| + | git clone https://salsa.debian.org/python-team/packages/dask.git | ||
| + | to retrieve the latest (possibly unreleased) updates to the package. | ||
| + | Need to get 4,321 kB of source archives. | ||
| + | Get:1 http://mirrors.wikimedia.org/ubuntu jammy/universe dask 2022.01.0+dfsg-1ubuntu1 (dsc) ... | ||
| + | Fetched 4,321 kB in 18s (236 kB/s) | ||
| + | dpkg-source: info: extracting dask in dask-2022.01.0+dfsg | ||
| + | dpkg-source: info: unpacking dask_2022.01.0+dfsg.orig.tar.xz | ||
| + | dpkg-source: info: unpacking dask_2022.01.0+dfsg-1ubuntu1.debian.tar.xz | ||
| + | dpkg-source: info: using patch list from debian/patches/series | ||
| + | dpkg-source: info: applying pytest-futurewarning.patch | ||
| + | dpkg-source: info: applying remove-bokeh-embeds.patch | ||
| + | dpkg-source: info: applying use-debian-version.patch | ||
| + | dpkg-source: info: applying reproducible-version.patch | ||
| + | dpkg-source: info: applying Use-the-packaged-MathJax.patch | ||
| + | dpkg-source: info: applying use-local-intersphinx.patch | ||
| + | dpkg-source: info: applying use-local-reference-yaml.patch | ||
| + | dpkg-source: info: applying js-yaml.patch | ||
| + | dpkg-source: info: applying use-youtube-nocookie.patch | ||
| + | dpkg-source: info: applying reproducible-config-autofunction.patch | ||
| + | dpkg-source: info: applying 32bit-comatibility.patch | ||
| + | dpkg-source: info: applying scipy1.8.patch | ||
| + | </pre> | ||
| + | |||
| + | === Jupyter Notebooks === | ||
| + | |||
| + | Notes: the demo material from Actinia/GRASS, opendatacube and others use an AWS connection. We want to demo without requiring a connection. There was an idea that a video could be a local file with the demo. Enock said he can edit video, and that some High School Summer of Code students submit their project this way, but the quality is not professional. Angelos suggested that any demo in a video should also be available to actually run, if the network is working; also the GRASS Notebooks download data, and then use that as the demo, instead of doing work only in the clouds. Brian said we should move to beta1 with ordinary Jupyter and then make changes to the details of the Notebooks and python stack. | ||
| + | |||
| + | <pre> | ||
| + | |||
| + | </pre> | ||
| + | |||
| + | |||
| + | |||
| + | === opendatacube === | ||
| + | |||
| + | The '''Open Data Cube''' ('''ODC''') is an Open-Source Geospatial Data Management and Analysis Software project that helps you harness the power of Earth observation data. At its core, the ODC is a set of Python libraries and PostgreSQL database that helps you work with geospatial raster data. | ||
| + | |||
| + | Core features: | ||
| + | ------------------------------------------------------ | ||
| + | * Catalogue large amounts of Earth observation data | ||
| + | * Use a Python based API for query and data access | ||
| + | * Perform exploratory data analysis using popular Python libraries like Xarray, Pandas, and Matplotlib | ||
| + | |||
| + | Details | ||
| + | |||
| + | Website: https://www.opendatacube.org/ | ||
| + | |||
| + | Licence: Apache 2.0 | ||
| + | |||
| + | Software Version: 1.8.7 | ||
| + | |||
| + | Supported Platforms: Linux, Mac, Windows | ||
| + | |||
| + | API Interfaces: Python | ||
| + | |||
| + | 25aug22 | ||
| + | <pre> | ||
| + | FOSS4G Pete Gadomski pete.gadomski at Gmail | ||
| + | |||
| + | pystac v1.6.1 r/w static collections, catalogs, objects | ||
| + | pystac-client v0.4.0 r/w stac api | ||
| + | stactools v0.4.1 create,modify utils | ||
| + | odc-stac v0.3.1 load stac assets into xarray | ||
| + | |||
| + | </pre> | ||
| + | pystac version | ||
| + | ref: https://trac.osgeo.org/osgeolive/ticket/2393 | ||
| + | |||
| + | |||
| + | |||
| + | |||
| + | 31july2022 | ||
| + | |||
| + | <pre> | ||
| + | ~$ DATACUBE_CONFIG_PATH=~/.config/datacube/datacube.conf datacube -v system init | ||
| + | 2022-08-01 04:26:09,231 8491 datacube INFO Running datacube command: /usr/bin/datacube -v system init | ||
| + | Initialising database... | ||
| + | 2022-08-01 04:26:10,032 8491 datacube.drivers.postgres._core INFO Ensuring user roles. | ||
| + | 2022-08-01 04:26:10,044 8491 datacube.drivers.postgres._core INFO Creating schema. | ||
| + | 2022-08-01 04:26:10,045 8491 datacube.drivers.postgres._core INFO Creating tables. | ||
| + | 2022-08-01 04:26:10,093 8491 datacube.drivers.postgres._core INFO Creating triggers. | ||
| + | 2022-08-01 04:26:10,100 8491 datacube.drivers.postgres._core INFO Creating added column. | ||
| + | 2022-08-01 04:26:10,104 8491 datacube.drivers.postgres._core INFO Adding role grants. | ||
| + | 2022-08-01 04:26:10,106 8491 datacube.index.postgres.index INFO Adding default metadata types. | ||
| + | Created. | ||
| + | Checking indexes/views. | ||
| + | 2022-08-01 04:26:10,295 8491 datacube.drivers.postgres._api INFO Checking dynamic views/indexes. (rebuild views=True, indexes=False) | ||
| + | Done. | ||
| + | </pre> | ||
| + | |||
| + | 26july2022 | ||
| + | |||
| + | <pre> | ||
| + | $ datacube product add /path/to/landsat-clip.yml | ||
| + | </pre> | ||
| + | |||
| + | <pre> | ||
| + | --- landsat-clip.yml | ||
| + | name: clip_landsat | ||
| + | description: example ortho imagery | ||
| + | metadata_type: eo3 | ||
| + | |||
| + | license: CC-BY-4.0 | ||
| + | |||
| + | metadata: | ||
| + | product: | ||
| + | name: clip_landsat | ||
| + | |||
| + | storage: | ||
| + | crs: EPSG:32619 | ||
| + | resolution: | ||
| + | longitude: 28.497418829384827 | ||
| + | latitude: -28.503958771796388 | ||
| + | |||
| + | measurements: | ||
| + | - name: imagery | ||
| + | dtype: byte | ||
| + | nodata: -32768.0 | ||
| + | units: "meter" | ||
| + | </pre> | ||
| + | |||
| + | <pre> | ||
| + | $ rio info data/landsat/clip10.tif | ||
| + | {"bounds": [374141.9163735037, 4597362.958980484, 450657.48593040195, 4662494.504774039], "colorinterp": ["gray"], "count": 1, "crs": "EPSG:32619", "descriptions": [null], "driver": "GTiff", "dtype": "uint8", "height": 2285, "indexes": [1], "interleave": "band", "lnglat": [-70.054716274406, 41.81639512026538], "mask_flags": [["all_valid"]], "nodata": null, "res": [28.497418829384827, 28.503958771796388], "shape": [2285, 2685], "tiled": false, "transform": [28.497418829384827, 0.0, 374141.9163735037, 0.0, -28.503958771796388, 4662494.504774039, 0.0, 0.0, 1.0], "units": [null], "width": 2685} | ||
| + | </pre> | ||
| + | |||
| + | <pre> | ||
| + | # UUID of the dataset | ||
| + | id: f884df9b-4458-bbbb-aaaa-1a52a2db8a1a | ||
| + | $schema: 'https://schemas.opendatacube.org/dataset' | ||
| + | |||
| + | # Product name | ||
| + | product: | ||
| + | name: clip_landsat_example0 | ||
| + | |||
| + | # Native CRS, assumed to be the same across all bands | ||
| + | crs: "epsg:32619" | ||
| + | |||
| + | # Mapping name:str -> { shape: Tuple[ny: int, nx: int] | ||
| + | # transform: Tuple[float x 9]} | ||
| + | # Captures image size, and geo-registration | ||
| + | grids: | ||
| + | default: # "default" grid must be present | ||
| + | shape: [2285, 2685] | ||
| + | transform: [28.497418829384827, 0.0, 374141.9163735037, 0.0, -28.503958771796388, 4662494.504774039, 0.0, 0.0, 1.0] | ||
| + | |||
| + | # Per band storage information and references into `grids` | ||
| + | # Bands using the "default" grid should not need to reference it | ||
| + | measurements: | ||
| + | red: # Band using "default" grid should omit `grid` key | ||
| + | path: red.tif # Path relative to the dataset location | ||
| + | |||
| + | # optional dataset location (useful for public datasets) | ||
| + | #location: https://landsatonaws.com/L8/099/072/LC08_L1GT_099072_20200523_20200523_01_RT/metadata.yaml | ||
| + | |||
| + | # Dataset properties, prefer STAC standard names here | ||
| + | # Timestamp is the only compulsory field here | ||
| + | properties: | ||
| + | eo:platform: landsat-8 | ||
| + | eo:instrument: OLI_TIRS | ||
| + | |||
| + | # When recording time range use dtr:{start,end}_datetime | ||
| + | dtr:start_datetime: 2020-01-01T07:02:02.233Z | ||
| + | dtr:end_datetime: 2020-01-01T07:03:04.397Z | ||
| + | |||
| + | # ODC specific "extensions" | ||
| + | odc:processing_datetime: 2020-02-02T08:10:00.000Z | ||
| + | |||
| + | odc:file_format: GeoTIFF | ||
| + | odc:region_code: "074071" # provider specific unique identified for the same location | ||
| + | # for Landsat '{:03d}{:03d}'.format(path, row) | ||
| + | |||
| + | dea:dataset_maturity: final # one of: final| interim| nrt (near real time) | ||
| + | odc:product_family: ard # can be useful for larger installations | ||
| + | |||
| + | # Lineage only references UUIDs of direct source datasets | ||
| + | # Mapping name:str -> [UUID] | ||
| + | lineage: {} # set to empty object if no lineage is defined | ||
| + | |||
| + | </pre> | ||
| + | |||
| + | 25jul2022 | ||
| + | |||
| + | <pre> | ||
| + | user@osgeolive:~$ pip install --user lark-parser | ||
| + | Collecting lark-parser | ||
| + | Downloading lark_parser-0.12.0-py2.py3-none-any.whl (103 kB) | ||
| + | ━---------------------------------━━━ 103.5/103.5 KB 352.8 kB/s eta 0:00:00 | ||
| + | Installing collected packages: lark-parser | ||
| + | ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. | ||
| + | mappyfile 0.9.7 requires jsonref==0.2, but you have jsonref 0.1 which is incompatible. | ||
| + | Successfully installed lark-parser-0.12.0 | ||
| + | $ createdb datacube | ||
| + | $ psql datacube -c 'create extension postgis' | ||
| + | $ mkdir ~/.config/datacube | ||
| + | $ cat << EOF > ~/.config/datacube/datacube.conf | ||
| + | [datacube] | ||
| + | db_database: datacube | ||
| − | + | # A blank host will use a local socket. Specify a hostname (such as localhost) to use TCP. | |
| − | + | db_hostname: | |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | .. | + | # Credentials are optional: you might have other Postgres authentication configured. |
| − | + | # The default username otherwise is the current user id. | |
| − | + | db_username: user | |
| − | + | db_password: user | |
| − | + | EOF | |
| + | |||
| + | user@osgeolive:~$ DATACUBE_CONFIG_PATH=~/.config/datacube/datacube.conf datacube -v system init | ||
| + | 2022-07-26 04:35:51,760 4663 datacube INFO Running datacube command: /usr/bin/datacube -v system init | ||
| + | Initialising database... | ||
| + | 2022-07-26 04:35:52,213 4663 datacube.drivers.postgres._core INFO Ensuring user roles. | ||
| + | 2022-07-26 04:35:52,270 4663 datacube.drivers.postgres._core INFO Creating schema. | ||
| + | 2022-07-26 04:35:52,271 4663 datacube.drivers.postgres._core INFO Creating tables. | ||
| + | 2022-07-26 04:35:53,006 4663 datacube.drivers.postgres._core INFO Creating triggers. | ||
| + | 2022-07-26 04:35:53,015 4663 datacube.drivers.postgres._core INFO Creating added column. | ||
| + | 2022-07-26 04:35:53,055 4663 datacube.drivers.postgres._core INFO Adding role grants. | ||
| + | 2022-07-26 04:35:53,066 4663 datacube.index.postgres.index INFO Adding default metadata types. | ||
| + | Created. | ||
| + | Checking indexes/views. | ||
| + | 2022-07-26 04:35:53,376 4663 datacube.drivers.postgres._api INFO Checking dynamic views/indexes. (rebuild views=True, indexes=False) | ||
| + | Done. | ||
</pre> | </pre> | ||
| + | https://github.com/opendatacube/datacube-dataset-config | ||
| + | https://github.com/opendatacube/datacube-dataset-config/tree/main/products | ||
| + | |||
| + | https://mybinder.org/v2/gh/opendatacube/odc-stac/develop?urlpath=lab/workspaces/demo | ||
| + | |||
| + | https://notebooks.gesis.org/binder/jupyter/user/opendatacube-odc-stac-cnk43e3t/lab/workspaces/demo/tree/notebooks/stac-load-S2-ms.ipynb | ||
| + | |||
| + | https://datacube-core.readthedocs.io/en/latest/installation/indexing-data/step-guide.html | ||
| + | |||
| + | 18June2022 - opendatacube notebooks have very current software under development. Finding the stable parts is a challenge. #osgeolive '''alpha1''' python-geo environment is surprisingly current, and matches a lot of ODC team dev environments including Folium. BUT two important parts are different: odc-devs have more DASK components (multi-processing chains); they have extended rasterio parts that I have not seen here yet. Others not present on alpha1 are | ||
| + | JupyterLab parts - we are not going to use those (I read in the reviews late last year JupyterLab still has quality problems). ipyleaflet is developed with JupyterLab.. I am not confident ipyleaflet will work.. maybe. The alpha1 dot-deb packaging simplifies setup, MUCH simpler than their dev setup, and we have no DeepLearning ML GPU libs here. | ||
| + | |||
| + | Minimal datacube install from dot-deb | ||
| + | $apt install python3-xarray python3-cfgrib python3-datacube | ||
| + | |||
| + | Packages that will be installed: python3-cachetools python3-cloudpickle python3-dask python3-datacube python3-distributed python3-fsspec python3-heapdict python3-locket python3-msgpack python3-partd python3-psutil python3-sortedcontainers python3-tblib python3-toolz python3-tornado python3-zict | ||
=== Jupyter R Install === | === Jupyter R Install === | ||
| Line 181: | Line 398: | ||
Building dependency tree... Done | Building dependency tree... Done | ||
Reading state information... Done | Reading state information... Done | ||
| − | |||
The following additional packages will be installed: | The following additional packages will be installed: | ||
| Line 226: | Line 442: | ||
r-cran-yaml r-cran-zoo r-doc-html r-recommended ttf-bitstream-vera | r-cran-yaml r-cran-zoo r-doc-html r-recommended ttf-bitstream-vera | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
Get:1 http://mirrors.wikimedia.org/ubuntu jammy/main amd64 bzip2-doc all 1.0.8-5build1 [500 kB] | Get:1 http://mirrors.wikimedia.org/ubuntu jammy/main amd64 bzip2-doc all 1.0.8-5build1 [500 kB] | ||
| Line 298: | Line 452: | ||
Selecting previously unselected package bzip2-doc. | Selecting previously unselected package bzip2-doc. | ||
(Reading database ... 438665 files and directories currently installed.) | (Reading database ... 438665 files and directories currently installed.) | ||
| − | |||
Setting up libjs-json (0~20210531+~1.0.8-1) ... | Setting up libjs-json (0~20210531+~1.0.8-1) ... | ||
| Line 320: | Line 473: | ||
Creating config file /etc/R/Renviron with new version | Creating config file /etc/R/Renviron with new version | ||
| − | + | ||
| − | + | </pre> | |
| − | + | ||
| − | + | Note: https://isciences.gitlab.io/exactextractr/ | |
| − | + | ||
| − | + | === pangeo test install === | |
| − | + | ||
| − | + | https://github.com/pangeo-data/pangeo-tutorial-gallery | |
| − | + | ||
| − | + | <pre> | |
| − | + | $ pip install --user geocube | |
| − | + | Collecting geocube | |
| − | + | Downloading geocube-0.3.2-py3-none-any.whl (20 kB) | |
| − | + | Requirement already satisfied: appdirs in /usr/lib/python3/dist-packages (from geocube) (1.4.4) | |
| − | + | Requirement already satisfied: pyproj>=2 in /usr/lib/python3/dist-packages (from geocube) (3.3.0) | |
| − | + | Requirement already satisfied: click>=6.0 in /usr/lib/python3/dist-packages (from geocube) (8.0.3) | |
| − | + | Collecting rioxarray>=0.4 | |
| − | + | Downloading rioxarray-0.11.1.tar.gz (49 kB) | |
| − | + | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 49.7/49.7 KB 283.0 kB/s eta 0:00:00 | |
| − | + | Installing build dependencies ... done | |
| − | + | Getting requirements to build wheel ... done | |
| − | + | Preparing metadata (pyproject.toml) ... done | |
| − | + | Collecting xarray>=0.17 | |
| − | + | Downloading xarray-2022.3.0-py3-none-any.whl (870 kB) | |
| − | + | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 870.9/870.9 KB 388.3 kB/s eta 0:00:00 | |
| − | + | Requirement already satisfied: numpy>=1.20 in /usr/lib/python3/dist-packages (from geocube) (1.21.5) | |
| − | + | Requirement already satisfied: scipy in /usr/lib/python3/dist-packages (from geocube) (1.8.0) | |
| − | + | Requirement already satisfied: geopandas>=0.7 in /usr/lib/python3/dist-packages (from geocube) (0.10.2) | |
| − | + | Collecting odc-geo | |
| − | + | Downloading odc_geo-0.2.1-py3-none-any.whl (102 kB) | |
| − | + | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 102.8/102.8 KB 279.6 kB/s eta 0:00:00 | |
| − | + | Requirement already satisfied: rasterio in /usr/lib/python3/dist-packages (from geocube) (1.2.10) | |
| − | + | Requirement already satisfied: packaging in /usr/lib/python3/dist-packages (from rioxarray>=0.4->geocube) (21.3) | |
| − | + | Requirement already satisfied: pandas>=1.1 in /usr/lib/python3/dist-packages (from xarray>=0.17->geocube) (1.3.5) | |
| − | + | Requirement already satisfied: affine in /usr/lib/python3/dist-packages (from odc-geo->geocube) (2.3.0) | |
| − | + | Requirement already satisfied: cachetools in /usr/lib/python3/dist-packages (from odc-geo->geocube) (5.0.0) | |
| − | + | Requirement already satisfied: shapely in /usr/lib/python3/dist-packages (from odc-geo->geocube) (1.8.0) | |
| − | + | Building wheels for collected packages: rioxarray | |
| − | + | Building wheel for rioxarray (pyproject.toml) ... done | |
| − | + | Created wheel for rioxarray: filename=rioxarray-0.11.1-py2.py3-none-any.whl size=50942 sha256=61bb0bfd8815420dc5129f7c7a14afff11796b6978c976a5b3001e54b16ac5e4 | |
| − | + | Stored in directory: /home/dbb/.cache/pip/wheels/65/e9/a4/20811fc3ecaddf11c40d1e649d0d1bbe3cbbbd71559ca3cd9b | |
| − | + | Successfully built rioxarray | |
| − | + | Installing collected packages: xarray, odc-geo, rioxarray, geocube | |
| − | + | WARNING: The script geocube is installed in '/home/dbb/.local/bin' which is not on PATH. | |
| − | + | Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location. | |
| − | + | Successfully installed geocube-0.3.2 odc-geo-0.2.1 rioxarray-0.11.1 xarray-2022.3.0 | |
| − | + | ||
| − | + | </pre> | |
| − | + | ||
| − | + | === env === | |
| − | + | ||
| − | + | TODO pytest tests integration_tests in datacube-core | |
| − | + | ||
| − | + | ||
| − | + | <pre> | |
| − | + | ||
| − | + | GDAL 3.4.3 | |
| − | + | numpy 1.21.5 | |
| − | + | scipy 1.8.0 | |
| − | + | dask 2022.1.0+dfsg | |
| − | + | pandas 1.3.5 | |
| − | + | geopandas 0.10.2 | |
| − | + | ipython 7.31.1 | |
| − | + | matplotlib 3.5.1 | |
| − | + | pyproj 3.3.0 | |
| − | + | scikit-learn 0.23.2 | |
| − | + | seaborn 0.11.2 | |
| − | + | datacube 0.0.0 | |
| − | + | ||
| − | + | APScheduler 0.0.0 | |
| − | + | Automat 20.2.0 | |
| − | + | Babel 2.8.0 | |
| − | + | Brotli 1.0.9 | |
| − | + | Cartopy 0.0.0 | |
| − | + | Cheetah3 3.2.6 | |
| − | + | Deprecated 1.2.13 | |
| − | + | Django 2.2.24 | |
| − | + | EOxServer 1.1.2 | |
| − | + | Faker 0.9.3 | |
| − | + | Fiona 1.8.21 | |
| − | + | Flask 2.0.1 | |
| − | + | GeoAlchemy2 0.10.2 | |
| − | + | GeoNode 3.3.2.post2 | |
| − | + | HeapDict 1.0.1 | |
| − | + | Jinja2 3.0.3 | |
| − | + | Mako 1.1.3 | |
| − | + | MapProxy 1.15.1 | |
| − | + | Markdown 3.3.6 | |
| − | + | MarkupSafe 2.0.1 | |
| − | + | Nik4 1.7.0 | |
| − | + | OWSLib 0.25.0 | |
| − | + | Pillow 9.0.1 | |
| − | + | PyGObject 3.42.1 | |
| − | + | PyHamcrest 2.0.2 | |
| − | + | PyJWT 2.3.0 | |
| − | + | PyNaCl 1.5.0 | |
| − | + | PyOpenGL 3.1.5 | |
| − | + | PyQt5-sip 12.9.1 | |
| − | + | PyQt5 5.15.6 | |
| − | + | PyYAML 5.4.1 | |
| − | + | Pygments 2.11.2 | |
| − | + | QScintilla 2.11.6 | |
| − | + | Rtree 0.9.7 | |
| − | + | SQLAlchemy 1.4.31 | |
| − | + | SecretStorage 3.3.1 | |
| − | + | Send2Trash 1.8.1b0 | |
| − | + | Shapely 1.8.0 | |
| − | + | Twisted 22.1.0 | |
| − | + | Unidecode 1.3.3 | |
| − | + | Werkzeug 2.0.2 | |
| − | + | adal 1.2.2 | |
| − | + | affine 2.3.0 | |
| − | + | aiohttp 3.8.1 | |
| − | + | aioredis 1.3.1 | |
| − | + | aiosignal 1.2.0 | |
| − | + | amqp 5.0.9 | |
| − | + | anyjson 0.3.3 | |
| − | + | appdirs 1.4.4 | |
| − | + | apt-xapian-index 0.49 | |
| − | + | argon2-cffi 21.1.0 | |
| − | + | async-timeout 4.0.1 | |
| − | + | attrs 21.2.0 | |
| − | + | avro 1.11.0 | |
| − | + | azure-template 0.0.18b3 | |
| − | + | backcall 0.2.0 | |
| − | + | bcrypt 3.2.0 | |
| − | + | beautifulsoup4 4.10.0 | |
| − | + | billiard 3.6.4.0 | |
| − | + | bleach 4.1.0 | |
| − | + | blinker 1.4 | |
| − | + | boto3 1.20.34 | |
| − | + | botocore 1.23.34 | |
| − | + | branca 0.4.2 | |
| − | + | cachetools 5.0.0 | |
| − | + | celery 5.2.3 | |
| − | + | certifi 2020.6.20 | |
| − | + | cftime 1.5.2 | |
| − | + | chardet 4.0.0 | |
| − | + | charset-normalizer 2.0.6 | |
| − | + | click-didyoumean 0.0.3 | |
| − | + | click-plugins 1.1.1 | |
| − | + | click-repl 0.2.0 | |
| − | + | click 8.0.3 | |
| − | + | cligj 0.7.2 | |
| − | + | cloudpickle 2.0.0 | |
| − | + | colorama 0.4.4 | |
| − | + | command-not-found 0.3 | |
| − | + | constantly 15.1.0 | |
| − | + | coverage 6.2 | |
| − | + | croniter 1.0.15 | |
| − | + | cryptography 3.4.8 | |
| − | + | cupshelpers 1.0 | |
| − | + | cycler 0.11.0 | |
| − | + | dbus-python 1.2.18 | |
| − | + | decorator 4.4.2 | |
| − | + | defer 1.0.6 | |
| − | + | defusedxml 0.7.1 | |
| − | + | deprecation 2.0.7 | |
| − | + | descartes 1.1.0 | |
| − | + | distributed 2022.1.0+ds.1 | |
| − | + | distro-info =1.1build1 | |
| − | + | distro 1.7.0 | |
| − | + | dj-database-url 0.5.0 | |
| − | + | dj-pagination 2.5.0 | |
| − | + | dnspython 2.1.0 | |
| − | + | docker 5.0.3 | |
| − | + | drf-extensions 0.7.1 | |
| − | + | drf-spectacular 0.21.1 | |
| − | + | drf-writable-nested 0.6.3 | |
| − | + | dynamic-rest 2.0.0 | |
| − | + | elasticsearch 7.16.2 | |
| − | + | entrypoints 0.4 | |
| − | + | ephem 4.1.3 | |
| − | + | factory-boy 2.11.1 | |
| − | + | flake8 4.0.1 | |
| − | + | flaky 3.7.0 | |
| − | + | folium 0.0.0 | |
| − | + | fonttools 4.29.1 | |
| − | + | frozenlist 1.2.0 | |
| − | + | fs 2.4.12 | |
| − | + | fsspec 2022.1.0 | |
| − | + | future 0.18.2 | |
| − | + | galternatives 1.0.8 | |
| − | + | geographiclib 1.52 | |
| − | + | geoip2 2.9.0 | |
| − | + | geojson 2.5.0 | |
| − | + | geolinks 0.2.0 | |
| − | + | geonode-announcements 2.0.2 | |
| − | + | geonode-avatar 5.0.7 | |
| − | + | geonode-dialogos 3.0.1 | |
| − | + | geonode-django-activity-stream 0.10.0 | |
| − | + | geonode-oauth-toolkit 2.2.2 | |
| − | + | geonode-user-messages 2.0.2 | |
| − | + | geoserver-restconfig 2.0.7 | |
| − | + | gisdata 0.5.4 | |
| − | + | glob2 0.5 | |
| − | + | gn-arcrest 10.5.4 | |
| − | + | gn-gsimporter 2.0.1 | |
| − | + | gps 3.22 | |
| − | + | greenlet 1.1.2 | |
| − | + | gunicorn 20.1.0 | |
| − | + | hiredis 1.0.1 | |
| − | + | html5lib 1.1 | |
| − | + | httplib2 0.20.2 | |
| − | + | humanize 0.0.0 | |
| − | + | hyperlink 21.0.0 | |
| − | + | idna 3.3 | |
| − | + | importlib-metadata 4.6.4 | |
| − | + | incremental 21.3.0 | |
| − | + | inflection 0.3.1 | |
| − | + | iniconfig 1.1.1 | |
| − | + | invoke 1.4.1 | |
| − | + | iotop 0.6 | |
| − | + | ipykernel 6.7.0 | |
| − | + | ipyleaflet 0.17.0 | |
| − | + | ipython_genutils 0.2.0 | |
| − | + | ipywidgets 6.0.0 | |
| − | + | iso8601 1.0.2 | |
| − | + | isodate 0.6.1 | |
| − | + | itsdangerous 2.1.0 | |
| − | + | jdcal 1.0 | |
| − | + | jedi 0.18.0 | |
| − | + | jeepney 0.7.1 | |
| − | + | jmespath 0.10.0 | |
| − | + | joblib 0.17.0 | |
| − | + | jsonfield 3.1.0 | |
| − | + | jsonref 0.1 | |
| − | + | jsonschema 3.2.0 | |
| − | + | jupyter-client 7.1.2 | |
| − | + | jupyter-core 4.9.1 | |
| − | + | jupyter-packaging 0.11.1 | |
| − | + | jupyterlab-pygments 0.1.2 | |
| − | + | jwcrypto 1.0 | |
| − | + | keyring 23.5.0 | |
| − | + | kiwisolver 1.3.2 | |
| − | + | kombu 5.2.3 | |
| − | + | language-selector 0.1 | |
| − | + | lark-parser 0.12.0 | |
| − | + | launchpadlib 1.10.16 | |
| − | + | lazr.restfulclient 0.14.4 | |
| − | + | lazr.uri 1.0.6 | |
| − | + | locket 0.2.1 | |
| − | + | lubuntu-update-notifier 0.4.dev0 | |
| − | + | lxml 4.8.0 | |
| − | + | lz4 3.1.3+dfsg | |
| − | + | mapnik 3.0.23 | |
| − | + | mappyfile 0.9.7 | |
| − | + | mapscript 7.6.4 | |
| − | + | matplotlib-inline 0.1.3 | |
| − | + | maxminddb 2.0.3 | |
| − | + | mccabe 0.6.1 | |
| − | + | mercantile 1.1.5 | |
| − | + | mock 4.0.3 | |
| − | + | more-itertools 8.10.0 | |
| − | + | mpmath 0.0.0 | |
| − | + | msal-extensions 1.0.0 | |
| − | + | msal 1.17.0 | |
| − | + | msgpack 1.0.3 | |
| − | + | msrest 0.6.21 | |
| − | + | msrestazure 0.6.4 | |
| − | + | multidict 5.1.0 | |
| − | + | munch 2.5.0 | |
| − | + | nbclient 0.5.6 | |
| − | + | nbconvert 6.4.0 | |
| − | + | nbformat 5.1.3 | |
| − | + | nest-asyncio 1.5.4 | |
| − | + | netCDF4 1.5.8 | |
| − | + | netifaces 0.11.0 | |
| − | + | networkx 2.4 | |
| − | + | notebook 6.4.8 | |
| − | + | oauthlib 3.2.0 | |
| − | + | osmapi 3.0.0 | |
| − | + | osmium 3.2.0 | |
| − | + | packaging 21.3 | |
| − | + | palettable 3.3.0 | |
| − | + | pandocfilters 1.5.0 | |
| − | + | paramiko 2.9.3 | |
| − | + | parse-type 0.5.6 | |
| − | + | parse 1.19.0 | |
| − | + | parso 0.8.1 | |
| − | + | partd 1.2.0 | |
| − | + | pbr 5.8.0 | |
| − | + | pexpect 4.8.0 | |
| − | + | pickleshare 0.7.5 | |
| − | + | pilkit 2.0 | |
| − | + | pinax-notifications 6.0.0 | |
| − | + | pinax-ratings 4.0.0 | |
| − | + | plotly 5.4.0 | |
| − | + | pluggy 0.13.0 | |
| − | + | ply 3.11 | |
| − | + | portalocker 2.2.1 | |
| − | + | prometheus-client 0.9.0 | |
| − | + | prompt-toolkit 3.0.28 | |
| − | + | psutil 5.9.0 | |
| − | + | psycopg2 2.8.6 | |
| − | + | ptyprocess 0.7.0 | |
| − | + | py 1.10.0 | |
| − | + | pyOpenSSL 21.0.0 | |
| − | + | pyasn1-modules 0.2.1 | |
| − | + | pyasn1 0.4.8 | |
| − | + | pycairo 1.20.1 | |
| − | + | pycodestyle 2.8.0 | |
| − | + | pycountry 20.7.3 | |
| − | + | pycql 0.0.8 | |
| − | + | pycsw 2.6.1 | |
| − | + | pycups 2.0.1 | |
| − | + | pydantic 1.8.2 | |
| − | + | pyflakes 2.4.0 | |
| − | + | pygeoapi 0.12.0 | |
| − | + | pylibmc 1.5.2 | |
| − | + | pyows 0.2.6 | |
| − | + | pyparsing 2.4.7 | |
| − | + | pyrsistent 0.18.1 | |
| − | + | pysal 2.1.0 | |
| − | + | pyserial 3.5 | |
| − | + | pyshp 2.2.0 | |
| − | + | pytest-bdd 3.2.1 | |
| − | + | pytest-django 3.5.1 | |
| − | + | pytest 6.2.5 | |
| − | + | python-apt 2.3.0+ubuntu2 | |
| + | python-crontab 2.6.0 | ||
| + | python-dateutil 2.8.1 | ||
| + | python-debian 0.1.43ubuntu1 | ||
| + | python-etcd 0.4.5 | ||
| + | python-memcached 1.58 | ||
| + | python-mimeparse 1.6.0 | ||
| + | python-slugify 4.0.0 | ||
| + | python3-openid 3.2.0 | ||
| + | pytz 2022.1 | ||
| + | pywps 4.5.1 | ||
| + | pyxdg 0.27 | ||
| + | pyzmq 22.3.0 | ||
| + | rasterio 1.3.0 | ||
| + | redis 3.5.3 | ||
| + | requests-oauthlib 1.3.0 | ||
| + | requests-toolbelt 0.9.1 | ||
| + | requests 2.25.1 | ||
| + | s3transfer 0.5.0 | ||
| + | schema 0.6.7 | ||
| + | selenium 4.0.0a1 | ||
| + | service-identity 18.1.0 | ||
| + | sherlock 0.3.2 | ||
| + | six 1.16.0 | ||
| + | smart-open 5.2.1 | ||
| + | snuggs 1.4.7 | ||
| + | sortedcontainers 2.1.0 | ||
| + | soupsieve 2.3.1 | ||
| + | sqlparse 0.4.2 | ||
| + | sympy 1.9 | ||
| + | systemd-python 234 | ||
| + | tblib 1.7.0 | ||
| + | tenacity 6.3.1 | ||
| + | terminado 0.13.1 | ||
| + | testpath 0.5.0 | ||
| + | threadpoolctl 3.1.0 | ||
| + | timeout-decorator 0.5.0 | ||
| + | tinydb 3.15.2 | ||
| + | toml 0.10.2 | ||
| + | tomlkit 0.9.2 | ||
| + | toolz 0.11.2 | ||
| + | tornado 6.1 | ||
| + | tqdm 4.57.0 | ||
| + | traitlets 5.1.1 | ||
| + | traittypes 0.2.1 | ||
| + | typing-extensions 3.10.0.2 | ||
| + | tzlocal 2.1 | ||
| + | ua-parser 0.10.0 | ||
| + | uamqp 1.5.1 | ||
| + | ubuntu-advantage-tools 27.7 | ||
| + | ubuntu-drivers-common 0.0.0 | ||
| + | ufoLib2 0.13.1 | ||
| + | ufw 0.36.1 | ||
| + | unattended-upgrades 0.1 | ||
| + | unicodecsv 0.14.1 | ||
| + | unicodedata2 14.0.0 | ||
| + | uritemplate 3.0.1 | ||
| + | urllib3 1.26.5 | ||
| + | usb-creator 0.3.7 | ||
| + | user-agents 2.2.0 | ||
| + | vine 5.0.0 | ||
| + | wadllib 1.3.6 | ||
| + | wcwidth 0.2.5 | ||
| + | webencodings 0.5.1 | ||
| + | websocket-client 1.2.3 | ||
| + | websockets 9.1 | ||
| + | widgetsnbextension 2.0.0 | ||
| + | wrapt 1.13.3 | ||
| + | wxPython 4.0.7 | ||
| + | xarray 0.16.1 | ||
| + | xdg 5 | ||
| + | xkit 0.0.0 | ||
| + | xmljson 0.1.9 | ||
| + | xmltodict 0.12.0 | ||
| + | xyzservices 2022.6.0 | ||
| + | yarl 1.7.2 | ||
| + | zict 2.0.0 | ||
| + | zipp 1.0.0 | ||
| + | zipstream 1.1.4 | ||
| + | zope.interface 5.4.0 | ||
| + | |||
| + | django-allauth 0.47.0 | ||
| + | django-appconf 1.0.3 | ||
| + | django-autocomplete-light 3.5.1 | ||
| + | django-bootstrap3-datetimepicker-2 2.8.2 | ||
| + | django-celery-beat 2.2.1 | ||
| + | django-celery-results 2.0.0 | ||
| + | django-cors-headers 3.11.0 | ||
| + | django-downloadview 2.3.0 | ||
| + | django-filter 2.4.0 | ||
| + | django-floppyforms 1.9.0 | ||
| + | django-forms-bootstrap 3.1.0 | ||
| + | django-geonode-mapstore-client 3.3.2 | ||
| + | django-grappelli 2.15.1 | ||
| + | django-guardian 2.4.0 | ||
| + | django-haystack 3.1.1 | ||
| + | django-imagekit 4.1.0 | ||
| + | django-invitations 1.9.3 | ||
| + | django-ipware 4.0.0 | ||
| + | django-js-asset 1.2.2 | ||
| + | django-jsonfield-backport 1.0.2 | ||
| + | django-leaflet 0.27.1 | ||
| + | django-markdownify 0.9.1 | ||
| + | django-model-utils 0.0.0 | ||
| + | django-modeltranslation 0.17.5 | ||
| + | django-mptt 0.13.2 | ||
| + | django-polymorphic 3.1.0 | ||
| + | django-recaptcha 2.0.6 | ||
| + | django-storages 1.12.3 | ||
| + | django-taggit 2.1.0 | ||
| + | django-tastypie 0.14.4 | ||
| + | django-timezone-field 5.0 | ||
| + | django-tinymce 3.3.0 | ||
| + | django-treebeard 4.5.1 | ||
| + | django-user-agents 0.4.0 | ||
| + | django-uuid-upload-path 1.0.0 | ||
| + | django-widget-tweaks 1.4.8 | ||
| + | djangorestframework-gis 0.18 | ||
| + | djangorestframework-guardian 0.3.0 | ||
| + | djangorestframework 3.12.4 | ||
| + | |||
| + | azure-agrifood-farming 1.0.0b1 | ||
| + | azure-ai-anomalydetector 3.0.0b3 | ||
| + | azure-ai-formrecognizer 3.2.0b2 | ||
| + | azure-ai-language-conversations 1.0.0b1 | ||
| + | azure-ai-language-questionanswering 1.0.0 | ||
| + | azure-ai-metricsadvisor 1.0.1 | ||
| + | azure-ai-textanalytics 5.2.0b3 | ||
| + | azure-ai-translation-document 1.0.0b6 | ||
| + | azure-appconfiguration 1.3.0 | ||
| + | azure-applicationinsights 0.1.0 | ||
| + | azure-batch 11.0.0 | ||
| + | azure-cognitiveservices-anomalydetector 0.3.0 | ||
| + | azure-cognitiveservices-formrecognizer 0.1.1 | ||
| + | azure-cognitiveservices-knowledge-qnamaker 0.3.0 | ||
| + | azure-cognitiveservices-language-luis 0.7.0 | ||
| + | azure-cognitiveservices-language-spellcheck 2.0.0 | ||
| + | azure-cognitiveservices-language-textanalytics 0.2.0 | ||
| + | azure-cognitiveservices-personalizer 0.1.0 | ||
| + | azure-cognitiveservices-search-autosuggest 0.2.0 | ||
| + | azure-cognitiveservices-search-customimagesearch 0.2.0 | ||
| + | azure-cognitiveservices-search-customsearch 0.3.0 | ||
| + | azure-cognitiveservices-search-entitysearch 2.0.0 | ||
| + | azure-cognitiveservices-search-imagesearch 2.0.0 | ||
| + | azure-cognitiveservices-search-newssearch 2.0.0 | ||
| + | azure-cognitiveservices-search-videosearch 2.0.0 | ||
| + | azure-cognitiveservices-search-visualsearch 0.2.0 | ||
| + | azure-cognitiveservices-search-websearch 2.0.0 | ||
| + | azure-cognitiveservices-vision-computervision 0.9.0 | ||
| + | azure-cognitiveservices-vision-contentmoderator 1.0.0 | ||
| + | azure-cognitiveservices-vision-customvision 3.1.0 | ||
| + | azure-cognitiveservices-vision-face 0.5.0 | ||
| + | azure-common 1.1.28 | ||
| + | azure-communication-chat 1.1.0 | ||
| + | azure-communication-identity 1.0.1 | ||
| + | azure-communication-networktraversal 1.0.0b1 | ||
| + | azure-communication-phonenumbers 1.0.1 | ||
| + | azure-communication-sms 1.0.1 | ||
| + | azure-confidentialledger 1.0.0b1 | ||
| + | azure-containerregistry 1.0.0b7 | ||
| + | azure-core 1.20.1 | ||
| + | azure-data-tables 12.1.1 | ||
| + | azure-digitaltwins-core 1.1.0 | ||
| + | azure-eventgrid 4.7.0 | ||
| + | azure-eventhub-checkpointstoreblob-aio 1.1.4 | ||
| + | azure-eventhub-checkpointstoreblob 1.1.4 | ||
| + | azure-eventhub-checkpointstoretable 1.0.0b1 | ||
| + | azure-eventhub 5.6.2 | ||
| + | azure-graphrbac 0.61.1 | ||
| + | azure-identity 1.7.1 | ||
| + | azure-iot-deviceupdate 1.0.0b1 | ||
| + | azure-iot-modelsrepository 1.0.0b2 | ||
| + | azure-keyvault-administration 4.1.0b2 | ||
| + | azure-keyvault-certificates 4.4.0b2 | ||
| + | azure-keyvault-keys 4.5.0b5 | ||
| + | azure-keyvault-secrets 4.4.0b2 | ||
| + | azure-keyvault 4.1.0 | ||
| + | azure-loganalytics 0.1.0 | ||
| + | azure-media-analytics-edge 1.0.0b1 | ||
| + | azure-media-videoanalyzer-edge 1.0.0b3 | ||
| + | azure-messaging-webpubsubservice 1.0.0b3 | ||
| + | azure-mgmt-advisor 9.0.0 | ||
| + | azure-mgmt-agfood 1.0.0b1 | ||
| + | azure-mgmt-agrifood 1.0.0b1 | ||
| + | azure-mgmt-alertsmanagement 1.0.0 | ||
| + | azure-mgmt-apimanagement 2.1.0 | ||
| + | azure-mgmt-appconfiguration 2.0.0 | ||
| + | azure-mgmt-applicationinsights 1.0.0 | ||
| + | azure-mgmt-appplatform 6.1.0 | ||
| + | azure-mgmt-attestation 1.0.0 | ||
| + | azure-mgmt-authorization 2.0.0 | ||
| + | azure-mgmt-automanage 1.0.0b2 | ||
| + | azure-mgmt-automation 1.1.0b1 | ||
| + | azure-mgmt-avs 7.0.0b1 | ||
| + | azure-mgmt-azureadb2c 1.0.0b1 | ||
| + | azure-mgmt-azurearcdata 1.0.0 | ||
| + | azure-mgmt-azurestack 1.0.0 | ||
| + | azure-mgmt-azurestackhci 6.1.0b1 | ||
| + | azure-mgmt-baremetalinfrastructure 1.0.0 | ||
| + | azure-mgmt-batch 16.0.0 | ||
| + | azure-mgmt-batchai 7.0.0b1 | ||
| + | azure-mgmt-billing 6.0.0 | ||
| + | azure-mgmt-botservice 1.0.0 | ||
| + | azure-mgmt-cdn 11.0.0 | ||
| + | azure-mgmt-changeanalysis 1.0.0 | ||
| + | azure-mgmt-chaos 1.0.0b2 | ||
| + | azure-mgmt-cognitiveservices 12.0.0 | ||
| + | azure-mgmt-commerce 6.0.0 | ||
| + | azure-mgmt-communication 1.0.0 | ||
| + | azure-mgmt-compute 23.1.0 | ||
| + | azure-mgmt-confidentialledger 1.0.0b1 | ||
| + | azure-mgmt-confluent 2.0.0b1 | ||
| + | azure-mgmt-consumption 8.0.0 | ||
| + | azure-mgmt-containerinstance 9.1.0 | ||
| + | azure-mgmt-containerregistry 8.2.0 | ||
| + | azure-mgmt-containerservice 16.3.0 | ||
| + | azure-mgmt-core 1.3.0 | ||
| + | azure-mgmt-cosmosdb 7.0.0b2 | ||
| + | azure-mgmt-costmanagement 3.0.0 | ||
| + | azure-mgmt-customproviders 1.0.0 | ||
| + | azure-mgmt-databox 1.0.0 | ||
| + | azure-mgmt-databoxedge 1.0.0 | ||
| + | azure-mgmt-databricks 1.1.0b1 | ||
| + | azure-mgmt-datadog 2.0.0 | ||
| + | azure-mgmt-datafactory 2.0.0 | ||
| + | azure-mgmt-datalake-analytics 0.6.0 | ||
| + | azure-mgmt-datalake-store 1.0.0 | ||
| + | azure-mgmt-datamigration 10.0.0 | ||
| + | azure-mgmt-dataprotection 1.0.0b1 | ||
| + | azure-mgmt-datashare 1.0.0 | ||
| + | azure-mgmt-deploymentmanager 1.0.0 | ||
| + | azure-mgmt-deviceupdate 1.0.0b3 | ||
| + | azure-mgmt-devspaces 1.0.0b1 | ||
| + | azure-mgmt-devtestlabs 9.0.0 | ||
| + | azure-mgmt-digitaltwins 6.0.0 | ||
| + | azure-mgmt-dns 8.0.0 | ||
| + | azure-mgmt-documentdb 0.1.3 | ||
| + | azure-mgmt-edgegateway 0.1.0 | ||
| + | azure-mgmt-edgeorder 1.0.0b1 | ||
| + | azure-mgmt-elastic 1.0.0 | ||
| + | azure-mgmt-eventgrid 9.0.0 | ||
| + | azure-mgmt-eventhub 10.0.0 | ||
| + | azure-mgmt-extendedlocation 1.0.0 | ||
| + | azure-mgmt-fluidrelay 1.0.0b1 | ||
| + | azure-mgmt-frontdoor 1.0.0 | ||
| + | azure-mgmt-guestconfig 1.0.0b1 | ||
| + | azure-mgmt-hanaonazure 1.0.0 | ||
| + | azure-mgmt-hdinsight 9.0.0 | ||
| + | azure-mgmt-healthbot 1.0.0b1 | ||
| + | azure-mgmt-healthcareapis 1.1.0b1 | ||
| + | azure-mgmt-hybridcompute 7.0.0 | ||
| + | azure-mgmt-hybridkubernetes 1.1.0 | ||
| + | azure-mgmt-hybridnetwork 1.0.0 | ||
| + | azure-mgmt-imagebuilder 1.0.0b1 | ||
| + | azure-mgmt-iotcentral 9.0.0b1 | ||
| + | azure-mgmt-iothub 2.1.0 | ||
| + | azure-mgmt-iothubprovisioningservices 1.0.0 | ||
| + | azure-mgmt-keyvault 9.2.0 | ||
| + | azure-mgmt-kubernetesconfiguration 1.0.0b1 | ||
| + | azure-mgmt-kusto 2.1.0 | ||
| + | azure-mgmt-labservices 1.0.0 | ||
| + | azure-mgmt-loganalytics 11.0.0 | ||
| + | azure-mgmt-logic 9.0.0 | ||
| + | azure-mgmt-logz 1.0.0 | ||
| + | azure-mgmt-machinelearningcompute 1.0.0b1 | ||
| + | azure-mgmt-machinelearningservices 1.0.0 | ||
| + | azure-mgmt-maintenance 2.0.0 | ||
| + | azure-mgmt-managedservices 6.0.0 | ||
| + | azure-mgmt-managementgroups 1.0.0 | ||
| + | azure-mgmt-managementpartner 1.0.0 | ||
| + | azure-mgmt-maps 2.0.0 | ||
| + | azure-mgmt-marketplaceordering 1.1.0 | ||
| + | azure-mgmt-media 8.0.0 | ||
| + | azure-mgmt-mixedreality 1.0.0 | ||
| + | azure-mgmt-monitor 2.0.0 | ||
| + | azure-mgmt-msi 6.0.0b1 | ||
| + | azure-mgmt-netapp 5.1.0 | ||
| + | azure-mgmt-network 19.2.0 | ||
| + | azure-mgmt-notificationhubs 7.0.0 | ||
| + | azure-mgmt-operationsmanagement 1.0.0 | ||
| + | azure-mgmt-peering 1.0.0 | ||
| + | azure-mgmt-policyinsights 1.1.0b1 | ||
| + | azure-mgmt-portal 1.0.0 | ||
| + | azure-mgmt-powerbidedicated 1.0.0 | ||
| + | azure-mgmt-powerbiembedded 2.0.0 | ||
| + | azure-mgmt-privatedns 1.0.0 | ||
| + | azure-mgmt-purview 1.0.0 | ||
| + | azure-mgmt-quantum 1.0.0b2 | ||
| + | azure-mgmt-quota 1.0.0b2 | ||
| + | azure-mgmt-rdbms 10.0.0 | ||
| + | azure-mgmt-recoveryservices 2.0.0 | ||
| + | azure-mgmt-recoveryservicesbackup 3.0.0 | ||
| + | azure-mgmt-recoveryservicessiterecovery 1.0.0b1 | ||
| + | azure-mgmt-redhatopenshift 1.0.0 | ||
| + | azure-mgmt-redis 13.0.0 | ||
| + | azure-mgmt-redisenterprise 1.0.0 | ||
| + | azure-mgmt-regionmove 1.0.0b1 | ||
| + | azure-mgmt-relay 1.1.0 | ||
| + | azure-mgmt-reservations 1.0.0 | ||
| + | azure-mgmt-resource 20.0.0 | ||
| + | azure-mgmt-resourcegraph 8.1.0b1 | ||
| + | azure-mgmt-resourcehealth 1.0.0b1 | ||
| + | azure-mgmt-resourcemover 1.1.0b2 | ||
| + | azure-mgmt-scheduler 7.0.0b1 | ||
| + | azure-mgmt-search 8.0.0 | ||
| + | azure-mgmt-security 2.0.0b1 | ||
| + | azure-mgmt-securityinsight 1.0.0b1 | ||
| + | azure-mgmt-serialconsole 1.0.0 | ||
| + | azure-mgmt-servermanager 2.0.0 | ||
| + | azure-mgmt-servicebus 7.1.0 | ||
| + | azure-mgmt-servicefabric 2.0.0 | ||
| + | azure-mgmt-servicefabricmanagedclusters 1.0.0 | ||
| + | azure-mgmt-servicelinker 1.0.0b1 | ||
| + | azure-mgmt-signalr 1.0.0 | ||
| + | azure-mgmt-sql 3.0.1 | ||
| + | azure-mgmt-sqlvirtualmachine 1.0.0b1 | ||
| + | azure-mgmt-storage 19.0.0 | ||
| + | azure-mgmt-storagecache 1.1.0 | ||
| + | azure-mgmt-storageimportexport 1.0.0b1 | ||
| + | azure-mgmt-storagepool 1.0.0 | ||
| + | azure-mgmt-storagesync 1.0.0 | ||
| + | azure-mgmt-streamanalytics 1.0.0rc1 | ||
| + | azure-mgmt-subscription 1.0.0 | ||
| + | azure-mgmt-support 6.0.0 | ||
| + | azure-mgmt-synapse 2.1.0b2 | ||
| + | azure-mgmt-testbase 1.0.0b1 | ||
| + | azure-mgmt-timeseriesinsights 1.0.0 | ||
| + | azure-mgmt-trafficmanager 1.0.0b1 | ||
| + | azure-mgmt-videoanalyzer 1.0.0b3 | ||
| + | azure-mgmt-vmwarecloudsimple 1.0.0b1 | ||
| + | azure-mgmt-web 5.0.0 | ||
| + | azure-mgmt-webpubsub 1.0.0 | ||
| + | azure-mgmt-workloadmonitor 1.0.0b2 | ||
| + | azure-mixedreality-authentication 1.0.0b1 | ||
| + | azure-monitor-opentelemetry-exporter 1.0.0b6 | ||
| + | azure-monitor-query 1.0.1 | ||
| + | azure-purview-administration 1.0.0b2 | ||
| + | azure-purview-catalog 1.0.0b3 | ||
| + | azure-purview-scanning 1.0.0b3 | ||
| + | azure-schemaregistry-avroserializer 1.0.0b4 | ||
| + | azure-schemaregistry 1.0.0 | ||
| + | azure-search-documents 11.3.0b5 | ||
| + | azure-security-attestation 1.0.1 | ||
| + | azure-servicebus 7.4.0 | ||
| + | azure-servicefabric 8.0.0.0 | ||
| + | azure-servicemanagement-legacy 0.20.7 | ||
| + | azure-storage-blob-changefeed 12.0.0b3 | ||
| + | azure-storage-blob 12.9.0 | ||
| + | azure-storage-file-datalake 12.5.0 | ||
| + | azure-storage-file-share 12.6.0 | ||
| + | azure-storage-queue 12.1.6 | ||
| + | azure-synapse-accesscontrol 0.8.0 | ||
| + | azure-synapse-artifacts 0.10.0 | ||
| + | azure-synapse-managedprivateendpoints 0.5.0 | ||
| + | azure-synapse-monitoring 0.3.0 | ||
| + | azure-synapse-spark 0.8.0 | ||
| + | azure-synapse 0.1.1 | ||
| + | ----------------------------- ---------------------------- | ||
| + | Package Version | ||
| + | </pre> | ||
| + | |||
| + | <pre> | ||
| + | http://ci.terria.io/main/ | ||
| + | https://datacube-core.readthedocs.io/en/latest/installation/database/setup.html | ||
| + | https://docs.xarray.dev/en/stable/user-guide/plotting.html#robust | ||
| + | https://github.com/opendatacube/datacube-core/releases/tag/1.8.7 | ||
| + | https://github.com/opendatacube/odc-geo/issues | ||
| + | https://github.com/opendatacube/odc-geo/releases/tag/v0.2.0 | ||
| + | https://github.com/opendatacube/odc-stac/releases/tag/v0.3.0 | ||
| + | https://github.com/opendatacube/odc-stac/wiki/Generating-Rotated-Images-to-Save-Space | ||
| + | https://github.com/opendatacube/odc-tools/blob/develop/apps/dc_tools/odc/apps/dc_tools/fs_to_dc.py | ||
| + | https://maps.digitalearth.africa/ | ||
| + | https://odc-geo.readthedocs.io/en/latest/_api/odc.geo.xr.ODCExtensionDs.html | ||
| + | https://odc-geo.readthedocs.io/en/latest/_api/odc.geo.xr.ODCExtension.html | ||
| + | https://odc-geo.readthedocs.io/en/latest/raster-tools.html#plotting-on-a-map | ||
| + | https://odc-stac-demo.netlify.app/ | ||
| + | https://sandbox.digitalearth.africa/hub/login?next=%2Fhub%2F | ||
| + | https://www.usgs.gov/landsat-missions/landsat-collection-2-level-2-science-products | ||
| + | |||
| + | Alternately, you can configure the ODC connection to Postgres using environment variables: | ||
| + | DB_HOSTNAME | ||
| + | DB_USERNAME | ||
| + | DB_PASSWORD | ||
| + | DB_DATABASE | ||
| + | |||
| + | </pre> | ||
| + | |||
| + | |||
| + | DevInstall via Paul Haesler on Slack #open-data-cube | ||
| + | |||
| + | <pre> | ||
| + | # install numpy, pyproj and rasterio from Ubuntu distro via apt | ||
| + | sudo apt-get install python3-numpy python3-rasterio python3-pyproj | ||
| + | |||
| + | # Create virtualenv inheriting numpy and rasterio from system site-packages. | ||
| + | cd ~/venvs | ||
| + | virtualenv -p `which python3` --system-site-packages odc | ||
| + | |||
| + | # Activate new virtualenv | ||
| + | source odc/bin/activate | ||
| + | |||
| + | # Compile and install cf-units from source: | ||
| + | cd ~/src | ||
| + | git clone git@github.com:SciTools/cf-units.git cf-units | ||
| + | cd cf-units | ||
| + | pip install -e . | ||
| + | |||
| + | # install datacube-core from source (from pypi should be fine after next release) | ||
| + | cd ~/src/datacube/core | ||
| + | pip install -e .[all] | ||
| + | </pre> | ||
| + | |||
| + | === odc-geo === | ||
| + | <pre> | ||
| + | $ pip install --user --upgrade-strategy only-if-needed odc-geo | ||
| + | Collecting odc-geo | ||
| + | Downloading odc_geo-0.1.1-py3-none-any.whl (81 kB) | ||
| + | | | 81 kB 254 kB/s | ||
| + | Requirement already satisfied: affine in ./.local/lib/python3.8/site-packages (from odc-geo) (2.3.0) | ||
| + | Collecting cachetools | ||
| + | Downloading cachetools-5.0.0-py3-none-any.whl (9.1 kB) | ||
| + | Requirement already satisfied: numpy in ./.local/lib/python3.8/site-packages (from odc-geo) (1.21.5) | ||
| + | Requirement already satisfied: pyproj in /usr/lib/python3/dist-packages (from odc-geo) (3.2.1) | ||
| + | Requirement already satisfied: shapely in /usr/lib/python3/dist-packages (from odc-geo) (1.8.0) | ||
| + | Installing collected packages: cachetools, odc-geo | ||
| + | Successfully installed cachetools-5.0.0 odc-geo-0.1.1 | ||
| + | |||
| + | </pre> | ||
| + | |||
| + | === odc-stac === | ||
| + | |||
| + | <pre> | ||
| + | ## from STAC-load-ms-S2.ipynb | ||
| + | import dask.distributed | ||
| + | import dask.utils | ||
| + | import numpy as np | ||
| + | import planetary_computer as pc | ||
| + | import xarray as xr | ||
| + | from IPython.display import display | ||
| + | from pystac_client import Client | ||
| + | from odc.stac import configure_rio, stac_load | ||
| + | |||
| + | ## from STAC-load-e84-aws.ipynb | ||
| + | import dask.distributed | ||
| + | import folium | ||
| + | import folium.plugins | ||
| + | import geopandas as gpd | ||
| + | import shapely.geometry | ||
| + | from IPython.display import HTML, display | ||
| + | from pystac_client import Client | ||
| + | from odc.stac import configure_rio, stac_load | ||
| + | |||
</pre> | </pre> | ||
| Line 727: | Line 1,331: | ||
</pre> | </pre> | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
=== geoxarray === | === geoxarray === | ||
| Line 790: | Line 1,369: | ||
</pre> | </pre> | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
== OSM software stack == | == OSM software stack == | ||
| Line 954: | Line 1,433: | ||
in tutorial https://pygis.io/docs/d_access_osm.html | in tutorial https://pygis.io/docs/d_access_osm.html | ||
code https://pypi.org/project/osmnx/#files | code https://pypi.org/project/osmnx/#files | ||
| + | </pre> | ||
| + | |||
| + | |||
| + | <pre> | ||
| + | ## osm2pgsql FLEX layout post-processing via LUA | ||
| + | |||
| + | ./flex-config/ | ||
| + | route-relations.lua unitable.lua geometries.lua | ||
| + | data-types.lua attributes.lua compatible.lua | ||
| + | simple.lua places.lua generic.lua with-schema.lua | ||
| + | |||
| + | ./tests/data/ | ||
| + | test_output_flex_multigeom_polygon.lua | ||
| + | test_output_flex_way.lua | ||
| + | test_output_flex_area_3857.lua | ||
| + | test_output_flex_attr.lua | ||
| + | test_output_flex_stage2.lua | ||
| + | test_output_flex_nocluster.lua | ||
| + | test_output_flex_multigeom_multipolygon_split.lua | ||
| + | test_output_flex_multigeom.lua | ||
| + | test_output_flex_multigeom_multipolygon.lua | ||
| + | test_output_flex_nodes.lua | ||
| + | test_output_flex_area_4326.lua | ||
| + | test_output_flex_relation_combinations.lua | ||
| + | test_output_flex_nogeom.lua | ||
| + | test_output_flex_area.lua | ||
| + | test_output_flex_lua_fail.lua | ||
| + | test_output_flex_bbox.lua | ||
| + | test_output_flex_types.lua | ||
| + | test_output_flex_area_mix.lua | ||
| + | test_output_flex_relation_changes.lua | ||
| + | test_output_flex_schema.lua | ||
| + | test_output_flex_multigeom_geometry_split.lua | ||
| + | test_output_flex_stage2_alt.lua | ||
| + | test_output_flex_uni.lua | ||
| + | test_output_flex.lua | ||
| + | test_output_flex_validgeom.lua | ||
| + | test_output_flex_line.lua | ||
| + | test_output_flex_invalid_geom.lua | ||
| + | test_output_flex_multigeom_geometry.lua | ||
| + | test_output_flex_relations.lua | ||
| + | </pre> | ||
| + | |||
| + | <pre> | ||
| + | ## a full list of osmium verbs | ||
| + | osmium-add-locations-to-ways osmium-export osmium-merge-changes | ||
| + | osmium-apply-changes osmium-extract osmium-query-locations-index | ||
| + | osmium-cat osmium-file-formats osmium-renumber | ||
| + | osmium-changeset-filter osmium-fileinfo osmium-show | ||
| + | osmium-check-refs osmium-getid osmium-sort | ||
| + | osmium-create-locations-index osmium-getparents osmium-tags-filter | ||
| + | osmium-derive-changes osmium-index-types osmium-time-filter | ||
| + | osmium-diff osmium-merge | ||
</pre> | </pre> | ||
| Line 1,030: | Line 1,562: | ||
# Lines starting with "deb" are mandatory, while lines starting with "deb-src" | # Lines starting with "deb" are mandatory, while lines starting with "deb-src" | ||
# are for more detailed package information. | # are for more detailed package information. | ||
| − | + | ... | |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
------------------------- | ------------------------- | ||
| Line 1,086: | Line 1,569: | ||
deb http://ppa.launchpad.net/ubuntugis/ubuntugis-unstable/ubuntu focal main | deb http://ppa.launchpad.net/ubuntugis/ubuntugis-unstable/ubuntu focal main | ||
deb-src http://ppa.launchpad.net/ubuntugis/ubuntugis-unstable/ubuntu focal main | deb-src http://ppa.launchpad.net/ubuntugis/ubuntugis-unstable/ubuntu focal main | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
</pre> | </pre> | ||
| Line 1,232: | Line 1,661: | ||
$ pip install --user --upgrade --upgrade-strategy=only-if-needed sentinelhub | $ pip install --user --upgrade --upgrade-strategy=only-if-needed sentinelhub | ||
Requirement already up-to-date: sentinelhub in ./.local/lib/python3.8/site-packages (3.4.4) | Requirement already up-to-date: sentinelhub in ./.local/lib/python3.8/site-packages (3.4.4) | ||
| − | + | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
Collecting pillow<=8.4.0,>=8.3.2 | Collecting pillow<=8.4.0,>=8.3.2 | ||
Downloading Pillow-8.4.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.1 MB) | Downloading Pillow-8.4.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.1 MB) | ||
| | 3.1 MB 43 kB/s | | | 3.1 MB 43 kB/s | ||
| − | + | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
Installing collected packages: pillow | Installing collected packages: pillow | ||
Attempting uninstall: pillow | Attempting uninstall: pillow | ||
| Line 1,268: | Line 1,675: | ||
$ pip install --user --upgrade --upgrade-strategy=only-if-needed eo-learn | $ pip install --user --upgrade --upgrade-strategy=only-if-needed eo-learn | ||
Requirement already up-to-date: eo-learn in ./.local/lib/python3.8/site-packages (1.0.0) | Requirement already up-to-date: eo-learn in ./.local/lib/python3.8/site-packages (1.0.0) | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
$ pip install --user --upgrade --upgrade-strategy=only-if-needed ipyleaflet | $ pip install --user --upgrade --upgrade-strategy=only-if-needed ipyleaflet | ||
| Line 1,372: | Line 1,705: | ||
##jupyter nbextension enable --py --sys-prefix{?} ipyleaflet # can be skipped for notebook 5.3 and above | ##jupyter nbextension enable --py --sys-prefix{?} ipyleaflet # can be skipped for notebook 5.3 and above | ||
</pre> | </pre> | ||
| − | |||
== R setup == | == R setup == | ||
<pre> | <pre> | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
-- | -- | ||
| Line 1,408: | Line 1,734: | ||
</pre> | </pre> | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
<pre> | <pre> | ||
| Line 1,620: | Line 1,845: | ||
<pre> | <pre> | ||
| − | + | osgeolive rc1 python3_all | |
| − | + | APScheduler==0.0.0 | |
| − | + | Automat==20.2.0 | |
| − | + | Babel==2.8.0 | |
| − | + | Brotli==1.0.9 | |
| − | + | Cartopy==0.0.0 | |
| − | + | Cheetah3==3.2.6 | |
| − | + | Deprecated==1.2.13 | |
| − | + | Django==2.2.24 | |
| − | + | EOxServer==1.1.2 | |
| − | + | Faker==0.9.3 | |
| − | + | Fiona==1.8.21 | |
| − | + | Flask==2.0.1 | |
| − | + | GDAL==3.4.3 | |
| − | + | GeoAlchemy2==0.10.2 | |
| − | + | GeoNode==3.3.2.post2 | |
| − | + | HeapDict==1.0.1 | |
| − | + | Jinja2==3.0.3 | |
| − | + | Mako==1.1.3 | |
| − | + | MapProxy==1.15.1 | |
| − | + | Markdown==3.3.6 | |
| − | + | MarkupSafe==2.0.1 | |
| − | + | Nik4==1.7.0 | |
| − | + | OWSLib==0.25.0 | |
| − | + | Pillow==9.0.1 | |
| − | + | PyGObject==3.42.1 | |
| − | + | PyHamcrest==2.0.2 | |
| − | + | PyJWT==2.3.0 | |
| − | + | PyNaCl==1.5.0 | |
| − | + | PyOpenGL==3.1.5 | |
| − | + | PyQt5-sip==12.9.1 | |
| − | + | PyQt5==5.15.6 | |
| − | + | PyYAML==5.4.1 | |
| − | + | Pygments==2.11.2 | |
| − | + | QScintilla==2.11.6 | |
| − | + | Rtree==0.9.7 | |
| − | + | SQLAlchemy==1.4.31 | |
| − | + | SecretStorage==3.3.1 | |
| − | + | Send2Trash==1.8.1b0 | |
| − | + | Shapely==1.8.0 | |
| − | + | Twisted==22.1.0 | |
| − | + | Unidecode==1.3.3 | |
| − | + | Werkzeug==2.0.2 | |
| − | + | adal==1.2.2 | |
| − | + | affine==2.3.0 | |
| − | + | aiohttp==3.8.1 | |
| − | + | aioredis==1.3.1 | |
| − | + | aiosignal==1.2.0 | |
| − | + | amqp==5.0.9 | |
| − | + | anyjson==0.3.3 | |
| − | + | appdirs==1.4.4 | |
| − | + | apt-xapian-index==0.49 | |
| − | + | argon2-cffi==21.1.0 | |
| − | + | async-timeout==4.0.1 | |
| − | + | attrs==21.2.0 | |
| − | + | avro==1.11.0 | |
| − | + | azure-agrifood-farming==1.0.0b1 | |
| − | + | azure-ai-anomalydetector==3.0.0b3 | |
| − | + | azure-ai-formrecognizer==3.2.0b2 | |
| − | + | azure-ai-language-conversations==1.0.0b1 | |
| − | + | azure-ai-language-questionanswering==1.0.0 | |
| − | + | azure-ai-metricsadvisor==1.0.1 | |
| − | + | azure-ai-textanalytics==5.2.0b3 | |
| − | + | azure-ai-translation-document==1.0.0b6 | |
| − | + | azure-appconfiguration==1.3.0 | |
| − | + | azure-applicationinsights==0.1.0 | |
| − | + | azure-batch==11.0.0 | |
| − | + | azure-cognitiveservices-anomalydetector==0.3.0 | |
| − | + | azure-cognitiveservices-formrecognizer==0.1.1 | |
| − | + | azure-cognitiveservices-knowledge-qnamaker==0.3.0 | |
| − | + | azure-cognitiveservices-language-luis==0.7.0 | |
| − | + | azure-cognitiveservices-language-spellcheck==2.0.0 | |
| − | + | azure-cognitiveservices-language-textanalytics==0.2.0 | |
| − | + | azure-cognitiveservices-personalizer==0.1.0 | |
| − | + | azure-cognitiveservices-search-autosuggest==0.2.0 | |
| − | + | azure-cognitiveservices-search-customimagesearch==0.2.0 | |
| − | + | azure-cognitiveservices-search-customsearch==0.3.0 | |
| − | + | azure-cognitiveservices-search-entitysearch==2.0.0 | |
| − | + | azure-cognitiveservices-search-imagesearch==2.0.0 | |
| − | + | azure-cognitiveservices-search-newssearch==2.0.0 | |
| − | + | azure-cognitiveservices-search-videosearch==2.0.0 | |
| − | + | azure-cognitiveservices-search-visualsearch==0.2.0 | |
| − | + | azure-cognitiveservices-search-websearch==2.0.0 | |
| − | + | azure-cognitiveservices-vision-computervision==0.9.0 | |
| − | + | azure-cognitiveservices-vision-contentmoderator==1.0.0 | |
| − | + | azure-cognitiveservices-vision-customvision==3.1.0 | |
| − | + | azure-cognitiveservices-vision-face==0.5.0 | |
| − | + | azure-common==1.1.28 | |
| − | + | azure-communication-chat==1.1.0 | |
| − | + | azure-communication-identity==1.0.1 | |
| − | + | azure-communication-networktraversal==1.0.0b1 | |
| − | + | azure-communication-phonenumbers==1.0.1 | |
| − | + | azure-communication-sms==1.0.1 | |
| − | + | azure-confidentialledger==1.0.0b1 | |
| − | + | azure-containerregistry==1.0.0b7 | |
| − | + | azure-core==1.20.1 | |
| − | + | azure-data-tables==12.1.1 | |
| − | + | azure-digitaltwins-core==1.1.0 | |
| − | + | azure-eventgrid==4.7.0 | |
| − | + | azure-eventhub-checkpointstoreblob-aio==1.1.4 | |
| − | + | azure-eventhub-checkpointstoreblob==1.1.4 | |
| − | + | azure-eventhub-checkpointstoretable==1.0.0b1 | |
| − | + | azure-eventhub==5.6.2 | |
| − | + | azure-graphrbac==0.61.1 | |
| − | + | azure-identity==1.7.1 | |
| − | + | azure-iot-deviceupdate==1.0.0b1 | |
| − | + | azure-iot-modelsrepository==1.0.0b2 | |
| − | + | azure-keyvault-administration==4.1.0b2 | |
| − | + | azure-keyvault-certificates==4.4.0b2 | |
| − | + | azure-keyvault-keys==4.5.0b5 | |
| − | + | azure-keyvault-secrets==4.4.0b2 | |
| − | + | azure-keyvault==4.1.0 | |
| − | + | azure-loganalytics==0.1.0 | |
| − | + | azure-media-analytics-edge==1.0.0b1 | |
| − | + | azure-media-videoanalyzer-edge==1.0.0b3 | |
| − | + | azure-messaging-webpubsubservice==1.0.0b3 | |
| − | + | azure-mgmt-advisor==9.0.0 | |
| − | + | azure-mgmt-agfood==1.0.0b1 | |
| − | + | azure-mgmt-agrifood==1.0.0b1 | |
| − | + | azure-mgmt-alertsmanagement==1.0.0 | |
| − | + | azure-mgmt-apimanagement==2.1.0 | |
| − | + | azure-mgmt-appconfiguration==2.0.0 | |
| − | + | azure-mgmt-applicationinsights==1.0.0 | |
| − | + | azure-mgmt-appplatform==6.1.0 | |
| − | + | azure-mgmt-attestation==1.0.0 | |
| − | + | azure-mgmt-authorization==2.0.0 | |
| − | + | azure-mgmt-automanage==1.0.0b2 | |
| − | + | azure-mgmt-automation==1.1.0b1 | |
| − | + | azure-mgmt-avs==7.0.0b1 | |
| − | + | azure-mgmt-azureadb2c==1.0.0b1 | |
| − | + | azure-mgmt-azurearcdata==1.0.0 | |
| − | + | azure-mgmt-azurestack==1.0.0 | |
| − | + | azure-mgmt-azurestackhci==6.1.0b1 | |
| − | + | azure-mgmt-baremetalinfrastructure==1.0.0 | |
| − | + | azure-mgmt-batch==16.0.0 | |
| − | + | azure-mgmt-batchai==7.0.0b1 | |
| − | + | azure-mgmt-billing==6.0.0 | |
| − | + | azure-mgmt-botservice==1.0.0 | |
| − | + | azure-mgmt-cdn==11.0.0 | |
| − | + | azure-mgmt-changeanalysis==1.0.0 | |
| − | + | azure-mgmt-chaos==1.0.0b2 | |
| − | + | azure-mgmt-cognitiveservices==12.0.0 | |
| − | + | azure-mgmt-commerce==6.0.0 | |
| − | + | azure-mgmt-communication==1.0.0 | |
| − | + | azure-mgmt-compute==23.1.0 | |
| − | + | azure-mgmt-confidentialledger==1.0.0b1 | |
| − | + | azure-mgmt-confluent==2.0.0b1 | |
| − | + | azure-mgmt-consumption==8.0.0 | |
| − | + | azure-mgmt-containerinstance==9.1.0 | |
| − | + | azure-mgmt-containerregistry==8.2.0 | |
| − | + | azure-mgmt-containerservice==16.3.0 | |
| − | + | azure-mgmt-core==1.3.0 | |
| − | + | azure-mgmt-cosmosdb==7.0.0b2 | |
| − | + | azure-mgmt-costmanagement==3.0.0 | |
| − | + | azure-mgmt-customproviders==1.0.0 | |
| − | + | azure-mgmt-databox==1.0.0 | |
| − | + | azure-mgmt-databoxedge==1.0.0 | |
| − | + | azure-mgmt-databricks==1.1.0b1 | |
| − | + | azure-mgmt-datadog==2.0.0 | |
| − | + | azure-mgmt-datafactory==2.0.0 | |
| − | + | azure-mgmt-datalake-analytics==0.6.0 | |
| − | + | azure-mgmt-datalake-store==1.0.0 | |
| − | + | azure-mgmt-datamigration==10.0.0 | |
| − | + | azure-mgmt-dataprotection==1.0.0b1 | |
| − | + | azure-mgmt-datashare==1.0.0 | |
| − | + | azure-mgmt-deploymentmanager==1.0.0 | |
| − | + | azure-mgmt-deviceupdate==1.0.0b3 | |
| − | + | azure-mgmt-devspaces==1.0.0b1 | |
| − | + | azure-mgmt-devtestlabs==9.0.0 | |
| − | + | azure-mgmt-digitaltwins==6.0.0 | |
| − | + | azure-mgmt-dns==8.0.0 | |
| − | + | azure-mgmt-documentdb==0.1.3 | |
| − | + | azure-mgmt-edgegateway==0.1.0 | |
| − | + | azure-mgmt-edgeorder==1.0.0b1 | |
| − | + | azure-mgmt-elastic==1.0.0 | |
| − | + | azure-mgmt-eventgrid==9.0.0 | |
| − | + | azure-mgmt-eventhub==10.0.0 | |
| − | + | azure-mgmt-extendedlocation==1.0.0 | |
| − | + | azure-mgmt-fluidrelay==1.0.0b1 | |
| − | + | azure-mgmt-frontdoor==1.0.0 | |
| − | + | azure-mgmt-guestconfig==1.0.0b1 | |
| − | + | azure-mgmt-hanaonazure==1.0.0 | |
| − | + | azure-mgmt-hdinsight==9.0.0 | |
| − | + | azure-mgmt-healthbot==1.0.0b1 | |
| − | + | azure-mgmt-healthcareapis==1.1.0b1 | |
| − | + | azure-mgmt-hybridcompute==7.0.0 | |
| − | + | azure-mgmt-hybridkubernetes==1.1.0 | |
| − | + | azure-mgmt-hybridnetwork==1.0.0 | |
| − | + | azure-mgmt-imagebuilder==1.0.0b1 | |
| − | + | azure-mgmt-iotcentral==9.0.0b1 | |
| − | + | azure-mgmt-iothub==2.1.0 | |
| − | + | azure-mgmt-iothubprovisioningservices==1.0.0 | |
| − | + | azure-mgmt-keyvault==9.2.0 | |
| − | + | azure-mgmt-kubernetesconfiguration==1.0.0b1 | |
| − | + | azure-mgmt-kusto==2.1.0 | |
| − | + | azure-mgmt-labservices==1.0.0 | |
| − | + | azure-mgmt-loganalytics==11.0.0 | |
| − | + | azure-mgmt-logic==9.0.0 | |
| − | + | azure-mgmt-logz==1.0.0 | |
| − | + | azure-mgmt-machinelearningcompute==1.0.0b1 | |
| − | + | azure-mgmt-machinelearningservices==1.0.0 | |
| − | + | azure-mgmt-maintenance==2.0.0 | |
| − | + | azure-mgmt-managedservices==6.0.0 | |
| − | + | azure-mgmt-managementgroups==1.0.0 | |
| − | + | azure-mgmt-managementpartner==1.0.0 | |
| − | + | azure-mgmt-maps==2.0.0 | |
| − | + | azure-mgmt-marketplaceordering==1.1.0 | |
| − | + | azure-mgmt-media==8.0.0 | |
| − | + | azure-mgmt-mixedreality==1.0.0 | |
| − | + | azure-mgmt-monitor==2.0.0 | |
| − | + | azure-mgmt-msi==6.0.0b1 | |
| − | + | azure-mgmt-netapp==5.1.0 | |
| − | + | azure-mgmt-network==19.2.0 | |
| − | + | azure-mgmt-notificationhubs==7.0.0 | |
| − | + | azure-mgmt-operationsmanagement==1.0.0 | |
| − | + | azure-mgmt-peering==1.0.0 | |
| − | + | azure-mgmt-policyinsights==1.1.0b1 | |
| − | + | azure-mgmt-portal==1.0.0 | |
| − | + | azure-mgmt-powerbidedicated==1.0.0 | |
| − | + | azure-mgmt-powerbiembedded==2.0.0 | |
| − | + | azure-mgmt-privatedns==1.0.0 | |
| − | + | azure-mgmt-purview==1.0.0 | |
| − | + | azure-mgmt-quantum==1.0.0b2 | |
| − | + | azure-mgmt-quota==1.0.0b2 | |
| − | + | azure-mgmt-rdbms==10.0.0 | |
| − | + | azure-mgmt-recoveryservices==2.0.0 | |
| − | + | azure-mgmt-recoveryservicesbackup==3.0.0 | |
| − | + | azure-mgmt-recoveryservicessiterecovery==1.0.0b1 | |
| − | + | azure-mgmt-redhatopenshift==1.0.0 | |
| − | + | azure-mgmt-redis==13.0.0 | |
| − | + | azure-mgmt-redisenterprise==1.0.0 | |
| − | + | azure-mgmt-regionmove==1.0.0b1 | |
| − | + | azure-mgmt-relay==1.1.0 | |
| + | azure-mgmt-reservations==1.0.0 | ||
| + | azure-mgmt-resource==20.0.0 | ||
| + | azure-mgmt-resourcegraph==8.1.0b1 | ||
| + | azure-mgmt-resourcehealth==1.0.0b1 | ||
| + | azure-mgmt-resourcemover==1.1.0b2 | ||
| + | azure-mgmt-scheduler==7.0.0b1 | ||
| + | azure-mgmt-search==8.0.0 | ||
| + | azure-mgmt-security==2.0.0b1 | ||
| + | azure-mgmt-securityinsight==1.0.0b1 | ||
| + | azure-mgmt-serialconsole==1.0.0 | ||
| + | azure-mgmt-servermanager==2.0.0 | ||
| + | azure-mgmt-servicebus==7.1.0 | ||
| + | azure-mgmt-servicefabric==2.0.0 | ||
| + | azure-mgmt-servicefabricmanagedclusters==1.0.0 | ||
| + | azure-mgmt-servicelinker==1.0.0b1 | ||
| + | azure-mgmt-signalr==1.0.0 | ||
| + | azure-mgmt-sql==3.0.1 | ||
| + | azure-mgmt-sqlvirtualmachine==1.0.0b1 | ||
| + | azure-mgmt-storage==19.0.0 | ||
| + | azure-mgmt-storagecache==1.1.0 | ||
| + | azure-mgmt-storageimportexport==1.0.0b1 | ||
| + | azure-mgmt-storagepool==1.0.0 | ||
| + | azure-mgmt-storagesync==1.0.0 | ||
| + | azure-mgmt-streamanalytics==1.0.0rc1 | ||
| + | azure-mgmt-subscription==1.0.0 | ||
| + | azure-mgmt-support==6.0.0 | ||
| + | azure-mgmt-synapse==2.1.0b2 | ||
| + | azure-mgmt-testbase==1.0.0b1 | ||
| + | azure-mgmt-timeseriesinsights==1.0.0 | ||
| + | azure-mgmt-trafficmanager==1.0.0b1 | ||
| + | azure-mgmt-videoanalyzer==1.0.0b3 | ||
| + | azure-mgmt-vmwarecloudsimple==1.0.0b1 | ||
| + | azure-mgmt-web==5.0.0 | ||
| + | azure-mgmt-webpubsub==1.0.0 | ||
| + | azure-mgmt-workloadmonitor==1.0.0b2 | ||
| + | azure-mixedreality-authentication==1.0.0b1 | ||
| + | azure-monitor-opentelemetry-exporter==1.0.0b6 | ||
| + | azure-monitor-query==1.0.1 | ||
| + | azure-purview-administration==1.0.0b2 | ||
| + | azure-purview-catalog==1.0.0b3 | ||
| + | azure-purview-scanning==1.0.0b3 | ||
| + | azure-schemaregistry-avroserializer==1.0.0b4 | ||
| + | azure-schemaregistry==1.0.0 | ||
| + | azure-search-documents==11.3.0b5 | ||
| + | azure-security-attestation==1.0.1 | ||
| + | azure-servicebus==7.4.0 | ||
| + | azure-servicefabric==8.0.0.0 | ||
| + | azure-servicemanagement-legacy==0.20.7 | ||
| + | azure-storage-blob-changefeed==12.0.0b3 | ||
| + | azure-storage-blob==12.9.0 | ||
| + | azure-storage-file-datalake==12.5.0 | ||
| + | azure-storage-file-share==12.6.0 | ||
| + | azure-storage-queue==12.1.6 | ||
| + | azure-synapse-accesscontrol==0.8.0 | ||
| + | azure-synapse-artifacts==0.10.0 | ||
| + | azure-synapse-managedprivateendpoints==0.5.0 | ||
| + | azure-synapse-monitoring==0.3.0 | ||
| + | azure-synapse-spark==0.8.0 | ||
| + | azure-synapse==0.1.1 | ||
| + | azure-template==0.0.18b3 | ||
| + | backcall==0.2.0 | ||
| + | bcrypt==3.2.0 | ||
| + | beautifulsoup4==4.10.0 | ||
| + | billiard==3.6.4.0 | ||
| + | bleach==4.1.0 | ||
| + | blinker==1.4 | ||
| + | boto3==1.20.34 | ||
| + | botocore==1.23.34 | ||
| + | branca==0.4.2 | ||
| + | cachetools==5.0.0 | ||
| + | celery==5.2.3 | ||
| + | certifi==2020.6.20 | ||
| + | cftime==1.5.2 | ||
| + | chardet==4.0.0 | ||
| + | charset-normalizer==2.0.6 | ||
| + | click-didyoumean==0.0.3 | ||
| + | click-plugins==1.1.1 | ||
| + | click-repl==0.2.0 | ||
| + | click==8.0.3 | ||
| + | cligj==0.7.2 | ||
| + | cloudpickle==2.0.0 | ||
| + | colorama==0.4.4 | ||
| + | command-not-found==0.3 | ||
| + | constantly==15.1.0 | ||
| + | coverage==6.2 | ||
| + | croniter==1.0.15 | ||
| + | cryptography==3.4.8 | ||
| + | cupshelpers==1.0 | ||
| + | cycler==0.11.0 | ||
| + | dask==2022.1.0+dfsg | ||
| + | datacube==0.0.0 | ||
| + | dbus-python==1.2.18 | ||
| + | decorator==4.4.2 | ||
| + | defer==1.0.6 | ||
| + | defusedxml==0.7.1 | ||
| + | deprecation==2.0.7 | ||
| + | descartes==1.1.0 | ||
| + | distributed==2022.1.0+ds.1 | ||
| + | distro-info===1.1build1 | ||
| + | distro==1.7.0 | ||
| + | dj-database-url==0.5.0 | ||
| + | dj-pagination==2.5.0 | ||
| + | django-allauth==0.47.0 | ||
| + | django-appconf==1.0.3 | ||
| + | django-autocomplete-light==3.5.1 | ||
| + | django-bootstrap3-datetimepicker-2==2.8.2 | ||
| + | django-celery-beat==2.2.1 | ||
| + | django-celery-results==2.0.0 | ||
| + | django-cors-headers==3.11.0 | ||
| + | django-downloadview==2.3.0 | ||
| + | django-filter==2.4.0 | ||
| + | django-floppyforms==1.9.0 | ||
| + | django-forms-bootstrap==3.1.0 | ||
| + | django-geonode-mapstore-client==3.3.2 | ||
| + | django-grappelli==2.15.1 | ||
| + | django-guardian==2.4.0 | ||
| + | django-haystack==3.1.1 | ||
| + | django-imagekit==4.1.0 | ||
| + | django-invitations==1.9.3 | ||
| + | django-ipware==4.0.0 | ||
| + | django-js-asset==1.2.2 | ||
| + | django-jsonfield-backport==1.0.2 | ||
| + | django-leaflet==0.27.1 | ||
| + | django-markdownify==0.9.1 | ||
| + | django-model-utils==0.0.0 | ||
| + | django-modeltranslation==0.17.5 | ||
| + | django-mptt==0.13.2 | ||
| + | django-polymorphic==3.1.0 | ||
| + | django-recaptcha==2.0.6 | ||
| + | django-storages==1.12.3 | ||
| + | django-taggit==2.1.0 | ||
| + | django-tastypie==0.14.4 | ||
| + | django-timezone-field==5.0 | ||
| + | django-tinymce==3.3.0 | ||
| + | django-treebeard==4.5.1 | ||
| + | django-user-agents==0.4.0 | ||
| + | django-uuid-upload-path==1.0.0 | ||
| + | django-widget-tweaks==1.4.8 | ||
| + | djangorestframework-gis==0.18 | ||
| + | djangorestframework-guardian==0.3.0 | ||
| + | djangorestframework==3.12.4 | ||
| + | dnspython==2.1.0 | ||
| + | docker==5.0.3 | ||
| + | drf-extensions==0.7.1 | ||
| + | drf-spectacular==0.21.1 | ||
| + | drf-writable-nested==0.6.3 | ||
| + | dynamic-rest==2.0.0 | ||
| + | elasticsearch==7.16.2 | ||
| + | entrypoints==0.4 | ||
| + | ephem==4.1.3 | ||
| + | factory-boy==2.11.1 | ||
| + | flake8==4.0.1 | ||
| + | flaky==3.7.0 | ||
| + | folium==0.0.0 | ||
| + | fonttools==4.29.1 | ||
| + | frozenlist==1.2.0 | ||
| + | fs==2.4.12 | ||
| + | fsspec==2022.1.0 | ||
| + | future==0.18.2 | ||
| + | galternatives==1.0.8 | ||
| + | geographiclib==1.52 | ||
| + | geoip2==2.9.0 | ||
| + | geojson==2.5.0 | ||
| + | geolinks==0.2.0 | ||
| + | geonode-announcements==2.0.2 | ||
| + | geonode-avatar==5.0.7 | ||
| + | geonode-dialogos==3.0.1 | ||
| + | geonode-django-activity-stream==0.10.0 | ||
| + | geonode-oauth-toolkit==2.2.2 | ||
| + | geonode-user-messages==2.0.2 | ||
| + | geopandas==0.10.2 | ||
| + | geoserver-restconfig==2.0.7 | ||
| + | gisdata==0.5.4 | ||
| + | glob2==0.5 | ||
| + | gn-arcrest==10.5.4 | ||
| + | gn-gsimporter==2.0.1 | ||
| + | gps==3.22 | ||
| + | greenlet==1.1.2 | ||
| + | gunicorn==20.1.0 | ||
| + | hiredis==1.0.1 | ||
| + | html5lib==1.1 | ||
| + | httplib2==0.20.2 | ||
| + | humanize==0.0.0 | ||
| + | hyperlink==21.0.0 | ||
| + | idna==3.3 | ||
| + | importlib-metadata==4.6.4 | ||
| + | incremental==21.3.0 | ||
| + | inflection==0.3.1 | ||
| + | iniconfig==1.1.1 | ||
| + | invoke==1.4.1 | ||
| + | iotop==0.6 | ||
| + | ipykernel==6.7.0 | ||
| + | ipyleaflet==0.17.0 | ||
| + | ipython==7.31.1 | ||
| + | ipython_genutils==0.2.0 | ||
| + | ipywidgets==6.0.0 | ||
| + | iso8601==1.0.2 | ||
| + | isodate==0.6.1 | ||
| + | itsdangerous==2.1.0 | ||
| + | jdcal==1.0 | ||
| + | jedi==0.18.0 | ||
| + | jeepney==0.7.1 | ||
| + | jmespath==0.10.0 | ||
| + | joblib==0.17.0 | ||
| + | jsonfield==3.1.0 | ||
| + | jsonref==0.1 | ||
| + | jsonschema==3.2.0 | ||
| + | jupyter-client==7.1.2 | ||
| + | jupyter-core==4.9.1 | ||
| + | jupyter-packaging==0.11.1 | ||
| + | jupyterlab-pygments==0.1.2 | ||
| + | jwcrypto==1.0 | ||
| + | keyring==23.5.0 | ||
| + | kiwisolver==1.3.2 | ||
| + | kombu==5.2.3 | ||
| + | language-selector==0.1 | ||
| + | lark-parser==0.12.0 | ||
| + | launchpadlib==1.10.16 | ||
| + | lazr.restfulclient==0.14.4 | ||
| + | lazr.uri==1.0.6 | ||
| + | locket==0.2.1 | ||
| + | lubuntu-update-notifier==0.4.dev0 | ||
| + | lxml==4.8.0 | ||
| + | lz4==3.1.3+dfsg | ||
| + | mapnik==3.0.23 | ||
| + | mappyfile==0.9.7 | ||
| + | mapscript==7.6.4 | ||
| + | matplotlib-inline==0.1.3 | ||
| + | matplotlib==3.5.1 | ||
| + | maxminddb==2.0.3 | ||
| + | mccabe==0.6.1 | ||
| + | mercantile==1.1.5 | ||
| + | mock==4.0.3 | ||
| + | more-itertools==8.10.0 | ||
| + | mpmath==0.0.0 | ||
| + | msal-extensions==1.0.0 | ||
| + | msal==1.17.0 | ||
| + | msgpack==1.0.3 | ||
| + | msrest==0.6.21 | ||
| + | msrestazure==0.6.4 | ||
| + | multidict==5.1.0 | ||
| + | munch==2.5.0 | ||
| + | nbclient==0.5.6 | ||
| + | nbconvert==6.4.0 | ||
| + | nbformat==5.1.3 | ||
| + | nest-asyncio==1.5.4 | ||
| + | netCDF4==1.5.8 | ||
| + | netifaces==0.11.0 | ||
| + | networkx==2.4 | ||
| + | notebook==6.4.8 | ||
| + | numpy==1.21.5 | ||
| + | oauthlib==3.2.0 | ||
| + | osmapi==3.0.0 | ||
| + | osmium==3.2.0 | ||
| + | packaging==21.3 | ||
| + | palettable==3.3.0 | ||
| + | pandas==1.3.5 | ||
| + | pandocfilters==1.5.0 | ||
| + | paramiko==2.9.3 | ||
| + | parse-type==0.5.6 | ||
| + | parse==1.19.0 | ||
| + | parso==0.8.1 | ||
| + | partd==1.2.0 | ||
| + | pbr==5.8.0 | ||
| + | pexpect==4.8.0 | ||
| + | pickleshare==0.7.5 | ||
| + | pilkit==2.0 | ||
| + | pinax-notifications==6.0.0 | ||
| + | pinax-ratings==4.0.0 | ||
| + | plotly==5.4.0 | ||
| + | pluggy==0.13.0 | ||
| + | ply==3.11 | ||
| + | portalocker==2.2.1 | ||
| + | prometheus-client==0.9.0 | ||
| + | prompt-toolkit==3.0.28 | ||
| + | psutil==5.9.0 | ||
| + | psycopg2==2.8.6 | ||
| + | ptyprocess==0.7.0 | ||
| + | py==1.10.0 | ||
| + | pyOpenSSL==21.0.0 | ||
| + | pyasn1-modules==0.2.1 | ||
| + | pyasn1==0.4.8 | ||
| + | pycairo==1.20.1 | ||
| + | pycodestyle==2.8.0 | ||
| + | pycountry==20.7.3 | ||
| + | pycql==0.0.8 | ||
| + | pycsw==2.6.1 | ||
| + | pycups==2.0.1 | ||
| + | pydantic==1.8.2 | ||
| + | pyflakes==2.4.0 | ||
| + | pygeoapi==0.12.0 | ||
| + | pylibmc==1.5.2 | ||
| + | pyows==0.2.6 | ||
| + | pyparsing==2.4.7 | ||
| + | pyproj==3.3.0 | ||
| + | pyrsistent==0.18.1 | ||
| + | pysal==2.1.0 | ||
| + | pyserial==3.5 | ||
| + | pyshp==2.2.0 | ||
| + | pytest-bdd==3.2.1 | ||
| + | pytest-django==3.5.1 | ||
| + | pytest==6.2.5 | ||
| + | python-apt==2.3.0+ubuntu2 | ||
| + | python-crontab==2.6.0 | ||
| + | python-dateutil==2.8.1 | ||
| + | python-debian===0.1.43ubuntu1 | ||
| + | python-etcd==0.4.5 | ||
| + | python-memcached==1.58 | ||
| + | python-mimeparse==1.6.0 | ||
| + | python-slugify==4.0.0 | ||
| + | python3-openid==3.2.0 | ||
| + | pytz==2022.1 | ||
| + | pywps==4.5.1 | ||
| + | pyxdg==0.27 | ||
| + | pyzmq==22.3.0 | ||
| + | rasterio==1.3.0 | ||
| + | redis==3.5.3 | ||
| + | requests-oauthlib==1.3.0 | ||
| + | requests-toolbelt==0.9.1 | ||
| + | requests==2.25.1 | ||
| + | s3transfer==0.5.0 | ||
| + | schema==0.6.7 | ||
| + | scikit-learn==0.23.2 | ||
| + | scipy==1.8.0 | ||
| + | seaborn==0.11.2 | ||
| + | selenium==4.0.0a1 | ||
| + | service-identity==18.1.0 | ||
| + | sherlock==0.3.2 | ||
| + | six==1.16.0 | ||
| + | smart-open==5.2.1 | ||
| + | snuggs==1.4.7 | ||
| + | sortedcontainers==2.1.0 | ||
| + | soupsieve==2.3.1 | ||
| + | sqlparse==0.4.2 | ||
| + | sympy==1.9 | ||
| + | systemd-python==234 | ||
| + | tblib==1.7.0 | ||
| + | tenacity==6.3.1 | ||
| + | terminado==0.13.1 | ||
| + | testpath==0.5.0 | ||
| + | threadpoolctl==3.1.0 | ||
| + | timeout-decorator==0.5.0 | ||
| + | tinydb==3.15.2 | ||
| + | toml==0.10.2 | ||
| + | tomlkit==0.9.2 | ||
| + | toolz==0.11.2 | ||
| + | tornado==6.1 | ||
| + | tqdm==4.57.0 | ||
| + | traitlets==5.1.1 | ||
| + | traittypes==0.2.1 | ||
| + | typing-extensions==3.10.0.2 | ||
| + | tzlocal==2.1 | ||
| + | ua-parser==0.10.0 | ||
| + | uamqp==1.5.1 | ||
| + | ubuntu-advantage-tools==27.7 | ||
| + | ubuntu-drivers-common==0.0.0 | ||
| + | ufoLib2==0.13.1 | ||
| + | ufw==0.36.1 | ||
| + | unattended-upgrades==0.1 | ||
| + | unicodecsv==0.14.1 | ||
| + | unicodedata2==14.0.0 | ||
| + | uritemplate==3.0.1 | ||
| + | urllib3==1.26.5 | ||
| + | usb-creator==0.3.7 | ||
| + | user-agents==2.2.0 | ||
| + | vine==5.0.0 | ||
| + | wadllib==1.3.6 | ||
| + | wcwidth==0.2.5 | ||
| + | webencodings==0.5.1 | ||
| + | websocket-client==1.2.3 | ||
| + | websockets==9.1 | ||
| + | widgetsnbextension==2.0.0 | ||
| + | wrapt==1.13.3 | ||
| + | wxPython==4.0.7 | ||
| + | xarray==0.16.1 | ||
| + | xdg==5 | ||
| + | xkit==0.0.0 | ||
| + | xmljson==0.1.9 | ||
| + | xmltodict==0.12.0 | ||
| + | xyzservices==2022.6.0 | ||
| + | yarl==1.7.2 | ||
| + | zict==2.0.0 | ||
| + | zipp==1.0.0 | ||
| + | zipstream==1.1.4 | ||
| + | zope.interface==5.4.0 | ||
</pre> | </pre> | ||
| − | == Focal Snapshot local | + | |
| + | |||
| + | === Focal Snapshot local === | ||
<pre> | <pre> | ||
Sat 26 Feb 2022 07:10:31 PM PST | Sat 26 Feb 2022 07:10:31 PM PST | ||
Latest revision as of 17:41, 22 February 2023
Python Libraries Strategy
Fresh priority python3 for the Jupyter Notebooks of 2023
- GeoPandas (and pySAL) :
gpd 0.12direct link to GEOS 3.11, popular extension to Pandas data science; please recall that pySAL is merging into the GeoPandas project overall; GeoPandas+pySAL use matplotlib graphics base, prefers Folium for web maps (?)
- Numpy & Pandas :
np 1.21.5,pd 1.3.5fundamental packages
- PostGIS writing done with pyscopg2
2.9.2(low-level) or geoalchemy20.10.2(ORM based on sqlalchemy)
- rasterio : modern geoTIFF handling; sophisticated library design; not easy to build from source
1.3.4
- Shapely & Fiona : direct link to libGEOS/ogr from python; example Notebooks in place
Shapely-1.8.5Fiona-1.8.22
- opendatacube core and Notebook client examples v1.8.7 -LINK- odc-geo a minimal Opendatacube setup (see below)
- pySTAC spatial-temporal analysis standard; opendatacube collaborators v1.4 -LINK- updt v1.6
- stactools is a collection of interfaces and utilities, TBD from odc soon -LINK-
- fsspec -LINK-
- geopython OWSLib, pygeoapi, pygeometa v0.9.1, others .. All -LINK-
- Scikit-Learn : original machine-learning library by international research team led by French math; stands the tests of time; integrated with SciPy for Fortran, BLAS, LAPACK libs; numpy for data allocation; important primitives like PCA, SVM, and KNN are optimized in practical ways, and then benchmarked against pure Fortran or C++ for comparison
0.23.2
- boto for AWS S3, other data store transfer; can use AWS credentials (or Hetzner, or..) modern version using pip installed locally
- osmium libosmium2-dev, libosmium2-doc, python3-pyosmium, osmium-tool : a C++ framework for working with OSM data files; osmium library bindings for Python 3 ##
osmium version 1.14.0; libosmium version 2.18.0; Supported PBF compression types: none zlib lz4; Copyright (C) 2013-2022 Jochen Topf <jochen@topf.org>
- mapnik libmapnik3.1, python3-mapnik : mapnik rendering engine for OSM maps and others
libmapnik.so.3.1.0
- mapclassify : part of pySAL, versions must match with geopandas setup --LINK--
- lightgbm : MSFT python, updt pip3 install --user --upgrade-strategy=only-if-needed lightgbm ; v3.3.2
- DASK job lib -LINK-
- inline maps vs slippy maps : cartopy, other matplotlib variants are inline static; notebook web maps need js libs e.g. ipyleaflet
- EOmaps TODO evaluate here -LINK-
- georasters TODO evaluate -LINK
- Canada Met - Meteorological Service of Canada Open Data User Documentation -LINK-
- LiDAR : this is slightly painful since modern commercial GIS is flooded with this tech, delivered by advanced Western companies seeking something novel to sell. Changes to the LASzip licensing have enabled inclusion, but as of today, no Debian maintainer in place, and bas wants PDAL out at this time. -EMAIL- -EMAIL2- *update* PDAL via dot-deb is included in ol15
- DeepLearning "no" : deep learning has taken over in the modern AI/ML research, for funding and hype, but not on this disk. Please note that the ML libraries on osgeolive are completely useful, accurate and performant today.. no need for a constant and fast Internet connection, nor a compute infrastructure the size of a large naval ship, or special impenetrable models that can only be built by those machines. -LINK- Serious and in-demand applications like "facial recognition" are not included here. Many real applications to remote sensing are built using DeepLearning, but those are not available on this disk. Some benefits of not including DeepLearning : no dependencies on tricky GPU libs; not suffering from fast-updates of important ML core libraries; avoid black-box training models, and their disk space; avoid software patent problems in Western Nations.
"I feel that a common and well-known distro like this is an opportunity to build engineering cooperation, between teams that may not interact otherwise.. like the physical code sprints" -darkblueb in California
Example Notebooks in previous OSGeoLive -LINK-
Other Resources: Pangeo PYTHIA -LINK-
opendatacube "Cube in a Box" -LINK-
--
Jammy Notes
Using PPA ubuntugis-unstable & Ubuntu Universe dot-deb packages, the installation results look roughly like this:
mjam@x10jam:~$ cat /etc/lsb-release
DISTRIB_ID=Ubuntu
DISTRIB_RELEASE=22.04
DISTRIB_CODENAME=jammy
DISTRIB_DESCRIPTION="Ubuntu 22.04 LTS"
#--
libgeos3.11.1 (libgeos3.11.1)
libgdal-dev (3.6.2+dfsg-1~jammy0)
postgresql-14-postgis-3 (3.3.2+dfsg-1~jammy0)
PGSQL="140" POSTGIS="3.3.2" GEOS="3.11.1-CAPI-1.17.0" PROJ="9.1.1" LIBJSON="0.15"
#--
System:
python: 3.10.4 (main, Apr 2 2022, 09:04:19) [GCC 11.2.0]
executable: /usr/bin/python3
machine: Linux-5.15.0-25-generic-x86_64-with-glibc2.35
Python dependencies:
pip: 22.0.2
setuptools: 59.6.0
sklearn: 0.23.2
numpy: 1.21.5
scipy: 1.8.0
Cython: None
pandas: 1.3.5
matplotlib: 3.5.1
joblib: 0.17.0
threadpoolctl: 3.1.0
Built with OpenMP: True
Jupyter jammy Version
user@osgeolive:~$ jupyter --version
Selected Jupyter core packages...
IPython : 7.31.1
ipykernel : 6.7.0
ipywidgets : 6.0.0
jupyter_client : 7.1.2
jupyter_core : 4.9.1
jupyter_server : not installed
jupyterlab : not installed
nbclient : 0.5.6
nbconvert : 6.4.0
nbformat : 5.1.3
notebook : 6.4.8
qtconsole : not installed
traitlets : 5.1.1
user@osgeolive:~$ jupyter --paths
config:
/home/user/.jupyter
/home/user/.local/etc/jupyter
/usr/etc/jupyter
/usr/local/etc/jupyter
/etc/jupyter
data:
/home/user/.local/share/jupyter
/usr/local/share/jupyter
/usr/share/jupyter
runtime:
/home/user/.local/share/jupyter/runtime
$ apt-get source python-dask-doc Reading package lists... Done Picking 'dask' as source package instead of 'python-dask-doc' NOTICE: 'dask' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/python-team/packages/dask.git Please use: git clone https://salsa.debian.org/python-team/packages/dask.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4,321 kB of source archives. Get:1 http://mirrors.wikimedia.org/ubuntu jammy/universe dask 2022.01.0+dfsg-1ubuntu1 (dsc) ... Fetched 4,321 kB in 18s (236 kB/s) dpkg-source: info: extracting dask in dask-2022.01.0+dfsg dpkg-source: info: unpacking dask_2022.01.0+dfsg.orig.tar.xz dpkg-source: info: unpacking dask_2022.01.0+dfsg-1ubuntu1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying pytest-futurewarning.patch dpkg-source: info: applying remove-bokeh-embeds.patch dpkg-source: info: applying use-debian-version.patch dpkg-source: info: applying reproducible-version.patch dpkg-source: info: applying Use-the-packaged-MathJax.patch dpkg-source: info: applying use-local-intersphinx.patch dpkg-source: info: applying use-local-reference-yaml.patch dpkg-source: info: applying js-yaml.patch dpkg-source: info: applying use-youtube-nocookie.patch dpkg-source: info: applying reproducible-config-autofunction.patch dpkg-source: info: applying 32bit-comatibility.patch dpkg-source: info: applying scipy1.8.patch
Jupyter Notebooks
Notes: the demo material from Actinia/GRASS, opendatacube and others use an AWS connection. We want to demo without requiring a connection. There was an idea that a video could be a local file with the demo. Enock said he can edit video, and that some High School Summer of Code students submit their project this way, but the quality is not professional. Angelos suggested that any demo in a video should also be available to actually run, if the network is working; also the GRASS Notebooks download data, and then use that as the demo, instead of doing work only in the clouds. Brian said we should move to beta1 with ordinary Jupyter and then make changes to the details of the Notebooks and python stack.
opendatacube
The Open Data Cube (ODC) is an Open-Source Geospatial Data Management and Analysis Software project that helps you harness the power of Earth observation data. At its core, the ODC is a set of Python libraries and PostgreSQL database that helps you work with geospatial raster data.
Core features:
- Catalogue large amounts of Earth observation data
- Use a Python based API for query and data access
- Perform exploratory data analysis using popular Python libraries like Xarray, Pandas, and Matplotlib
Details
Website: https://www.opendatacube.org/
Licence: Apache 2.0
Software Version: 1.8.7
Supported Platforms: Linux, Mac, Windows
API Interfaces: Python
25aug22
FOSS4G Pete Gadomski pete.gadomski at Gmail
pystac v1.6.1 r/w static collections, catalogs, objects
pystac-client v0.4.0 r/w stac api
stactools v0.4.1 create,modify utils
odc-stac v0.3.1 load stac assets into xarray
pystac version ref: https://trac.osgeo.org/osgeolive/ticket/2393
31july2022
~$ DATACUBE_CONFIG_PATH=~/.config/datacube/datacube.conf datacube -v system init 2022-08-01 04:26:09,231 8491 datacube INFO Running datacube command: /usr/bin/datacube -v system init Initialising database... 2022-08-01 04:26:10,032 8491 datacube.drivers.postgres._core INFO Ensuring user roles. 2022-08-01 04:26:10,044 8491 datacube.drivers.postgres._core INFO Creating schema. 2022-08-01 04:26:10,045 8491 datacube.drivers.postgres._core INFO Creating tables. 2022-08-01 04:26:10,093 8491 datacube.drivers.postgres._core INFO Creating triggers. 2022-08-01 04:26:10,100 8491 datacube.drivers.postgres._core INFO Creating added column. 2022-08-01 04:26:10,104 8491 datacube.drivers.postgres._core INFO Adding role grants. 2022-08-01 04:26:10,106 8491 datacube.index.postgres.index INFO Adding default metadata types. Created. Checking indexes/views. 2022-08-01 04:26:10,295 8491 datacube.drivers.postgres._api INFO Checking dynamic views/indexes. (rebuild views=True, indexes=False) Done.
26july2022
$ datacube product add /path/to/landsat-clip.yml
--- landsat-clip.yml
name: clip_landsat
description: example ortho imagery
metadata_type: eo3
license: CC-BY-4.0
metadata:
product:
name: clip_landsat
storage:
crs: EPSG:32619
resolution:
longitude: 28.497418829384827
latitude: -28.503958771796388
measurements:
- name: imagery
dtype: byte
nodata: -32768.0
units: "meter"
$ rio info data/landsat/clip10.tif
{"bounds": [374141.9163735037, 4597362.958980484, 450657.48593040195, 4662494.504774039], "colorinterp": ["gray"], "count": 1, "crs": "EPSG:32619", "descriptions": [null], "driver": "GTiff", "dtype": "uint8", "height": 2285, "indexes": [1], "interleave": "band", "lnglat": [-70.054716274406, 41.81639512026538], "mask_flags": [["all_valid"]], "nodata": null, "res": [28.497418829384827, 28.503958771796388], "shape": [2285, 2685], "tiled": false, "transform": [28.497418829384827, 0.0, 374141.9163735037, 0.0, -28.503958771796388, 4662494.504774039, 0.0, 0.0, 1.0], "units": [null], "width": 2685}
# UUID of the dataset
id: f884df9b-4458-bbbb-aaaa-1a52a2db8a1a
$schema: 'https://schemas.opendatacube.org/dataset'
# Product name
product:
name: clip_landsat_example0
# Native CRS, assumed to be the same across all bands
crs: "epsg:32619"
# Mapping name:str -> { shape: Tuple[ny: int, nx: int]
# transform: Tuple[float x 9]}
# Captures image size, and geo-registration
grids:
default: # "default" grid must be present
shape: [2285, 2685]
transform: [28.497418829384827, 0.0, 374141.9163735037, 0.0, -28.503958771796388, 4662494.504774039, 0.0, 0.0, 1.0]
# Per band storage information and references into `grids`
# Bands using the "default" grid should not need to reference it
measurements:
red: # Band using "default" grid should omit `grid` key
path: red.tif # Path relative to the dataset location
# optional dataset location (useful for public datasets)
#location: https://landsatonaws.com/L8/099/072/LC08_L1GT_099072_20200523_20200523_01_RT/metadata.yaml
# Dataset properties, prefer STAC standard names here
# Timestamp is the only compulsory field here
properties:
eo:platform: landsat-8
eo:instrument: OLI_TIRS
# When recording time range use dtr:{start,end}_datetime
dtr:start_datetime: 2020-01-01T07:02:02.233Z
dtr:end_datetime: 2020-01-01T07:03:04.397Z
# ODC specific "extensions"
odc:processing_datetime: 2020-02-02T08:10:00.000Z
odc:file_format: GeoTIFF
odc:region_code: "074071" # provider specific unique identified for the same location
# for Landsat '{:03d}{:03d}'.format(path, row)
dea:dataset_maturity: final # one of: final| interim| nrt (near real time)
odc:product_family: ard # can be useful for larger installations
# Lineage only references UUIDs of direct source datasets
# Mapping name:str -> [UUID]
lineage: {} # set to empty object if no lineage is defined
25jul2022
user@osgeolive:~$ pip install --user lark-parser
Collecting lark-parser
Downloading lark_parser-0.12.0-py2.py3-none-any.whl (103 kB)
━---------------------------------━━━ 103.5/103.5 KB 352.8 kB/s eta 0:00:00
Installing collected packages: lark-parser
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
mappyfile 0.9.7 requires jsonref==0.2, but you have jsonref 0.1 which is incompatible.
Successfully installed lark-parser-0.12.0
$ createdb datacube
$ psql datacube -c 'create extension postgis'
$ mkdir ~/.config/datacube
$ cat << EOF > ~/.config/datacube/datacube.conf
[datacube]
db_database: datacube
# A blank host will use a local socket. Specify a hostname (such as localhost) to use TCP.
db_hostname:
# Credentials are optional: you might have other Postgres authentication configured.
# The default username otherwise is the current user id.
db_username: user
db_password: user
EOF
user@osgeolive:~$ DATACUBE_CONFIG_PATH=~/.config/datacube/datacube.conf datacube -v system init
2022-07-26 04:35:51,760 4663 datacube INFO Running datacube command: /usr/bin/datacube -v system init
Initialising database...
2022-07-26 04:35:52,213 4663 datacube.drivers.postgres._core INFO Ensuring user roles.
2022-07-26 04:35:52,270 4663 datacube.drivers.postgres._core INFO Creating schema.
2022-07-26 04:35:52,271 4663 datacube.drivers.postgres._core INFO Creating tables.
2022-07-26 04:35:53,006 4663 datacube.drivers.postgres._core INFO Creating triggers.
2022-07-26 04:35:53,015 4663 datacube.drivers.postgres._core INFO Creating added column.
2022-07-26 04:35:53,055 4663 datacube.drivers.postgres._core INFO Adding role grants.
2022-07-26 04:35:53,066 4663 datacube.index.postgres.index INFO Adding default metadata types.
Created.
Checking indexes/views.
2022-07-26 04:35:53,376 4663 datacube.drivers.postgres._api INFO Checking dynamic views/indexes. (rebuild views=True, indexes=False)
Done.
https://github.com/opendatacube/datacube-dataset-config https://github.com/opendatacube/datacube-dataset-config/tree/main/products
https://mybinder.org/v2/gh/opendatacube/odc-stac/develop?urlpath=lab/workspaces/demo
https://datacube-core.readthedocs.io/en/latest/installation/indexing-data/step-guide.html
18June2022 - opendatacube notebooks have very current software under development. Finding the stable parts is a challenge. #osgeolive alpha1 python-geo environment is surprisingly current, and matches a lot of ODC team dev environments including Folium. BUT two important parts are different: odc-devs have more DASK components (multi-processing chains); they have extended rasterio parts that I have not seen here yet. Others not present on alpha1 are JupyterLab parts - we are not going to use those (I read in the reviews late last year JupyterLab still has quality problems). ipyleaflet is developed with JupyterLab.. I am not confident ipyleaflet will work.. maybe. The alpha1 dot-deb packaging simplifies setup, MUCH simpler than their dev setup, and we have no DeepLearning ML GPU libs here.
Minimal datacube install from dot-deb
$apt install python3-xarray python3-cfgrib python3-datacube
Packages that will be installed: python3-cachetools python3-cloudpickle python3-dask python3-datacube python3-distributed python3-fsspec python3-heapdict python3-locket python3-msgpack python3-partd python3-psutil python3-sortedcontainers python3-tblib python3-toolz python3-tornado python3-zict
Jupyter R Install
dbb@x10jam:~$ sudo apt install r-cran-sf
Reading package lists... Done
Building dependency tree... Done
Reading state information... Done
The following additional packages will be installed:
bzip2-doc gfortran gfortran-11 libblas-dev libbz2-dev libc-ares2 libgfortran-11-dev libjs-d3 libjs-es5-shim
libjs-highlight.js libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-json
libjs-microplugin.js libjs-modernizr libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev
libnlopt0 libnode72 libreadline-dev libudunits2-0 libudunits2-data littler node-highlight.js node-html5shiv
node-normalize.css nodejs nodejs-doc r-base-core r-base-dev r-cran-abind r-cran-acepack r-cran-askpass r-cran-assertthat
r-cran-backports r-cran-base64enc r-cran-bench r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-boot
r-cran-brio r-cran-broom r-cran-cachem r-cran-callr r-cran-caret r-cran-catools r-cran-cba r-cran-checkmate r-cran-chron
r-cran-class r-cran-classint r-cran-cli r-cran-cliapp r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark
r-cran-conquer r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-cvst r-cran-data.table r-cran-dbi
r-cran-dbitest r-cran-dbplyr r-cran-ddalpha r-cran-decor r-cran-deldir r-cran-deoptimr r-cran-desc r-cran-diffobj
r-cran-digest r-cran-dimred r-cran-domc r-cran-dplyr r-cran-drr r-cran-dt r-cran-dygraphs r-cran-e1071 r-cran-earth
r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastica r-cran-fastmap r-cran-fastmatch r-cran-filehash
r-cran-fnn r-cran-fontbitstreamvera r-cran-fontliberation r-cran-fontquiver r-cran-foreach r-cran-foreign r-cran-formula
r-cran-fs r-cran-fts r-cran-furrr r-cran-future r-cran-future.apply r-cran-gdata r-cran-generics r-cran-geometry
r-cran-geosphere r-cran-ggplot2 r-cran-gh r-cran-gitcreds r-cran-globals r-cran-glue r-cran-goftest r-cran-gower
r-cran-gplots r-cran-gridextra r-cran-gtable r-cran-gtools r-cran-hexbin r-cran-highr r-cran-hmisc r-cran-hms
r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-igraph r-cran-ini r-cran-interp
r-cran-ipred r-cran-isoband r-cran-iterators r-cran-jpeg r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth r-cran-knitr
r-cran-ks r-cran-labeling r-cran-later r-cran-lattice r-cran-latticeextra r-cran-lava r-cran-lazyeval r-cran-lifecycle
r-cran-linprog r-cran-listenv r-cran-littler r-cran-lme4 r-cran-lobstr r-cran-logcondens r-cran-lpsolve r-cran-lubridate
r-cran-lwgeom r-cran-magic r-cran-magrittr r-cran-mapproj r-cran-maps r-cran-maptools r-cran-markdown r-cran-mass
r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-mclust r-cran-mda r-cran-memoise r-cran-mets r-cran-mgcv
r-cran-mime r-cran-minqa r-cran-misc3d r-cran-mlbench r-cran-mlmetrics r-cran-mockery r-cran-mockr r-cran-modeldata
r-cran-modelmetrics r-cran-multcomp r-cran-multicool r-cran-munsell r-cran-mvtnorm r-cran-nlme r-cran-nloptr r-cran-nnet
r-cran-numderiv r-cran-openssl r-cran-palmerpenguins r-cran-parallelly r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig
r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plot3d r-cran-plotmo r-cran-plotrix r-cran-pls r-cran-plyr r-cran-png
r-cran-polyclip r-cran-pracma r-cran-praise r-cran-prettycode r-cran-prettyunits r-cran-proc r-cran-processx r-cran-prodlim
r-cran-profmem r-cran-progress r-cran-progressr r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-quadprog
r-cran-quantmod r-cran-quantreg r-cran-r6 r-cran-ragg r-cran-rann r-cran-rappdirs r-cran-raster r-cran-rcolorbrewer
r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcppprogress r-cran-rcpproll r-cran-recipes r-cran-rematch2
r-cran-reshape2 r-cran-rex r-cran-rgdal r-cran-rgl r-cran-rlang r-cran-rmarkdown r-cran-rmysql r-cran-robustbase r-cran-rocr
r-cran-rpart r-cran-rpostgresql r-cran-rprojroot r-cran-rsample r-cran-rspectra r-cran-rsqlite r-cran-rstudioapi r-cran-runit
r-cran-s2 r-cran-sandwich r-cran-sass r-cran-scales r-cran-selectr r-cran-setrng r-cran-sfsmisc r-cran-shiny r-cran-slider
r-cran-sodium r-cran-sourcetools r-cran-sp r-cran-sparsem r-cran-spatial r-cran-spatstat r-cran-spatstat.core
r-cran-spatstat.data r-cran-spatstat.geom r-cran-spatstat.linnet r-cran-spatstat.sparse r-cran-spatstat.utils r-cran-squarem
r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-svglite r-cran-sys r-cran-systemfonts
r-cran-teachingdemos r-cran-tensor r-cran-terra r-cran-testit r-cran-testthat r-cran-textshaping r-cran-th.data r-cran-tibble
r-cran-tidyr r-cran-tidyselect r-cran-tikzdevice r-cran-timedate r-cran-timereg r-cran-timeseries r-cran-tinytex
r-cran-tseries r-cran-ttr r-cran-units r-cran-utf8 r-cran-vctrs r-cran-vdiffr r-cran-viridis r-cran-viridislite r-cran-waldo
r-cran-warp r-cran-webutils r-cran-withr r-cran-wk r-cran-wkutils r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-xts
r-cran-yaml r-cran-zoo r-doc-html r-recommended ttf-bitstream-vera
Get:1 http://mirrors.wikimedia.org/ubuntu jammy/main amd64 bzip2-doc all 1.0.8-5build1 [500 kB]
...
Get:325 http://mirrors.wikimedia.org/ubuntu jammy/universe amd64 r-recommended all 4.1.2-1ubuntu2 [2,624 B]
Fetched 299 MB in 12min 45s (391 kB/s)
Extracting templates from packages: 100%
Selecting previously unselected package bzip2-doc.
(Reading database ... 438665 files and directories currently installed.)
Setting up libjs-json (0~20210531+~1.0.8-1) ...
Setting up r-cran-bh (1.74.0-2) ...
Setting up bzip2-doc (1.0.8-5build1) ...
Setting up ttf-bitstream-vera (1.10-8.2) ...
Setting up r-doc-html (4.1.2-1ubuntu2) ...
Setting up libgfortran-11-dev:amd64 (11.2.0-19ubuntu1) ...
Setting up libjs-sifter.js (0.6.0+dfsg-2) ...
Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
Setting up node-html5shiv (3.7.3+dfsg-4) ...
Setting up libnlopt0:amd64 (2.7.1-3build1) ...
Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ...
Setting up libc-ares2:amd64 (1.18.1-1build1) ...
Setting up libreadline-dev:amd64 (8.1.2-1) ...
Setting up libjs-modernizr (2.6.2+ds1-4) ...
Setting up libnode72:amd64 (12.22.9~dfsg-1ubuntu3) ...
Setting up libjs-jquery-datatables (1.11.4+dfsg-1) ...
Setting up libjs-es5-shim (4.6.4-1) ...
Setting up r-base-core (4.1.2-1ubuntu2) ...
Creating config file /etc/R/Renviron with new version
Note: https://isciences.gitlab.io/exactextractr/
pangeo test install
https://github.com/pangeo-data/pangeo-tutorial-gallery
$ pip install --user geocube
Collecting geocube
Downloading geocube-0.3.2-py3-none-any.whl (20 kB)
Requirement already satisfied: appdirs in /usr/lib/python3/dist-packages (from geocube) (1.4.4)
Requirement already satisfied: pyproj>=2 in /usr/lib/python3/dist-packages (from geocube) (3.3.0)
Requirement already satisfied: click>=6.0 in /usr/lib/python3/dist-packages (from geocube) (8.0.3)
Collecting rioxarray>=0.4
Downloading rioxarray-0.11.1.tar.gz (49 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 49.7/49.7 KB 283.0 kB/s eta 0:00:00
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting xarray>=0.17
Downloading xarray-2022.3.0-py3-none-any.whl (870 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 870.9/870.9 KB 388.3 kB/s eta 0:00:00
Requirement already satisfied: numpy>=1.20 in /usr/lib/python3/dist-packages (from geocube) (1.21.5)
Requirement already satisfied: scipy in /usr/lib/python3/dist-packages (from geocube) (1.8.0)
Requirement already satisfied: geopandas>=0.7 in /usr/lib/python3/dist-packages (from geocube) (0.10.2)
Collecting odc-geo
Downloading odc_geo-0.2.1-py3-none-any.whl (102 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 102.8/102.8 KB 279.6 kB/s eta 0:00:00
Requirement already satisfied: rasterio in /usr/lib/python3/dist-packages (from geocube) (1.2.10)
Requirement already satisfied: packaging in /usr/lib/python3/dist-packages (from rioxarray>=0.4->geocube) (21.3)
Requirement already satisfied: pandas>=1.1 in /usr/lib/python3/dist-packages (from xarray>=0.17->geocube) (1.3.5)
Requirement already satisfied: affine in /usr/lib/python3/dist-packages (from odc-geo->geocube) (2.3.0)
Requirement already satisfied: cachetools in /usr/lib/python3/dist-packages (from odc-geo->geocube) (5.0.0)
Requirement already satisfied: shapely in /usr/lib/python3/dist-packages (from odc-geo->geocube) (1.8.0)
Building wheels for collected packages: rioxarray
Building wheel for rioxarray (pyproject.toml) ... done
Created wheel for rioxarray: filename=rioxarray-0.11.1-py2.py3-none-any.whl size=50942 sha256=61bb0bfd8815420dc5129f7c7a14afff11796b6978c976a5b3001e54b16ac5e4
Stored in directory: /home/dbb/.cache/pip/wheels/65/e9/a4/20811fc3ecaddf11c40d1e649d0d1bbe3cbbbd71559ca3cd9b
Successfully built rioxarray
Installing collected packages: xarray, odc-geo, rioxarray, geocube
WARNING: The script geocube is installed in '/home/dbb/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Successfully installed geocube-0.3.2 odc-geo-0.2.1 rioxarray-0.11.1 xarray-2022.3.0
env
TODO pytest tests integration_tests in datacube-core
GDAL 3.4.3 numpy 1.21.5 scipy 1.8.0 dask 2022.1.0+dfsg pandas 1.3.5 geopandas 0.10.2 ipython 7.31.1 matplotlib 3.5.1 pyproj 3.3.0 scikit-learn 0.23.2 seaborn 0.11.2 datacube 0.0.0 APScheduler 0.0.0 Automat 20.2.0 Babel 2.8.0 Brotli 1.0.9 Cartopy 0.0.0 Cheetah3 3.2.6 Deprecated 1.2.13 Django 2.2.24 EOxServer 1.1.2 Faker 0.9.3 Fiona 1.8.21 Flask 2.0.1 GeoAlchemy2 0.10.2 GeoNode 3.3.2.post2 HeapDict 1.0.1 Jinja2 3.0.3 Mako 1.1.3 MapProxy 1.15.1 Markdown 3.3.6 MarkupSafe 2.0.1 Nik4 1.7.0 OWSLib 0.25.0 Pillow 9.0.1 PyGObject 3.42.1 PyHamcrest 2.0.2 PyJWT 2.3.0 PyNaCl 1.5.0 PyOpenGL 3.1.5 PyQt5-sip 12.9.1 PyQt5 5.15.6 PyYAML 5.4.1 Pygments 2.11.2 QScintilla 2.11.6 Rtree 0.9.7 SQLAlchemy 1.4.31 SecretStorage 3.3.1 Send2Trash 1.8.1b0 Shapely 1.8.0 Twisted 22.1.0 Unidecode 1.3.3 Werkzeug 2.0.2 adal 1.2.2 affine 2.3.0 aiohttp 3.8.1 aioredis 1.3.1 aiosignal 1.2.0 amqp 5.0.9 anyjson 0.3.3 appdirs 1.4.4 apt-xapian-index 0.49 argon2-cffi 21.1.0 async-timeout 4.0.1 attrs 21.2.0 avro 1.11.0 azure-template 0.0.18b3 backcall 0.2.0 bcrypt 3.2.0 beautifulsoup4 4.10.0 billiard 3.6.4.0 bleach 4.1.0 blinker 1.4 boto3 1.20.34 botocore 1.23.34 branca 0.4.2 cachetools 5.0.0 celery 5.2.3 certifi 2020.6.20 cftime 1.5.2 chardet 4.0.0 charset-normalizer 2.0.6 click-didyoumean 0.0.3 click-plugins 1.1.1 click-repl 0.2.0 click 8.0.3 cligj 0.7.2 cloudpickle 2.0.0 colorama 0.4.4 command-not-found 0.3 constantly 15.1.0 coverage 6.2 croniter 1.0.15 cryptography 3.4.8 cupshelpers 1.0 cycler 0.11.0 dbus-python 1.2.18 decorator 4.4.2 defer 1.0.6 defusedxml 0.7.1 deprecation 2.0.7 descartes 1.1.0 distributed 2022.1.0+ds.1 distro-info =1.1build1 distro 1.7.0 dj-database-url 0.5.0 dj-pagination 2.5.0 dnspython 2.1.0 docker 5.0.3 drf-extensions 0.7.1 drf-spectacular 0.21.1 drf-writable-nested 0.6.3 dynamic-rest 2.0.0 elasticsearch 7.16.2 entrypoints 0.4 ephem 4.1.3 factory-boy 2.11.1 flake8 4.0.1 flaky 3.7.0 folium 0.0.0 fonttools 4.29.1 frozenlist 1.2.0 fs 2.4.12 fsspec 2022.1.0 future 0.18.2 galternatives 1.0.8 geographiclib 1.52 geoip2 2.9.0 geojson 2.5.0 geolinks 0.2.0 geonode-announcements 2.0.2 geonode-avatar 5.0.7 geonode-dialogos 3.0.1 geonode-django-activity-stream 0.10.0 geonode-oauth-toolkit 2.2.2 geonode-user-messages 2.0.2 geoserver-restconfig 2.0.7 gisdata 0.5.4 glob2 0.5 gn-arcrest 10.5.4 gn-gsimporter 2.0.1 gps 3.22 greenlet 1.1.2 gunicorn 20.1.0 hiredis 1.0.1 html5lib 1.1 httplib2 0.20.2 humanize 0.0.0 hyperlink 21.0.0 idna 3.3 importlib-metadata 4.6.4 incremental 21.3.0 inflection 0.3.1 iniconfig 1.1.1 invoke 1.4.1 iotop 0.6 ipykernel 6.7.0 ipyleaflet 0.17.0 ipython_genutils 0.2.0 ipywidgets 6.0.0 iso8601 1.0.2 isodate 0.6.1 itsdangerous 2.1.0 jdcal 1.0 jedi 0.18.0 jeepney 0.7.1 jmespath 0.10.0 joblib 0.17.0 jsonfield 3.1.0 jsonref 0.1 jsonschema 3.2.0 jupyter-client 7.1.2 jupyter-core 4.9.1 jupyter-packaging 0.11.1 jupyterlab-pygments 0.1.2 jwcrypto 1.0 keyring 23.5.0 kiwisolver 1.3.2 kombu 5.2.3 language-selector 0.1 lark-parser 0.12.0 launchpadlib 1.10.16 lazr.restfulclient 0.14.4 lazr.uri 1.0.6 locket 0.2.1 lubuntu-update-notifier 0.4.dev0 lxml 4.8.0 lz4 3.1.3+dfsg mapnik 3.0.23 mappyfile 0.9.7 mapscript 7.6.4 matplotlib-inline 0.1.3 maxminddb 2.0.3 mccabe 0.6.1 mercantile 1.1.5 mock 4.0.3 more-itertools 8.10.0 mpmath 0.0.0 msal-extensions 1.0.0 msal 1.17.0 msgpack 1.0.3 msrest 0.6.21 msrestazure 0.6.4 multidict 5.1.0 munch 2.5.0 nbclient 0.5.6 nbconvert 6.4.0 nbformat 5.1.3 nest-asyncio 1.5.4 netCDF4 1.5.8 netifaces 0.11.0 networkx 2.4 notebook 6.4.8 oauthlib 3.2.0 osmapi 3.0.0 osmium 3.2.0 packaging 21.3 palettable 3.3.0 pandocfilters 1.5.0 paramiko 2.9.3 parse-type 0.5.6 parse 1.19.0 parso 0.8.1 partd 1.2.0 pbr 5.8.0 pexpect 4.8.0 pickleshare 0.7.5 pilkit 2.0 pinax-notifications 6.0.0 pinax-ratings 4.0.0 plotly 5.4.0 pluggy 0.13.0 ply 3.11 portalocker 2.2.1 prometheus-client 0.9.0 prompt-toolkit 3.0.28 psutil 5.9.0 psycopg2 2.8.6 ptyprocess 0.7.0 py 1.10.0 pyOpenSSL 21.0.0 pyasn1-modules 0.2.1 pyasn1 0.4.8 pycairo 1.20.1 pycodestyle 2.8.0 pycountry 20.7.3 pycql 0.0.8 pycsw 2.6.1 pycups 2.0.1 pydantic 1.8.2 pyflakes 2.4.0 pygeoapi 0.12.0 pylibmc 1.5.2 pyows 0.2.6 pyparsing 2.4.7 pyrsistent 0.18.1 pysal 2.1.0 pyserial 3.5 pyshp 2.2.0 pytest-bdd 3.2.1 pytest-django 3.5.1 pytest 6.2.5 python-apt 2.3.0+ubuntu2 python-crontab 2.6.0 python-dateutil 2.8.1 python-debian 0.1.43ubuntu1 python-etcd 0.4.5 python-memcached 1.58 python-mimeparse 1.6.0 python-slugify 4.0.0 python3-openid 3.2.0 pytz 2022.1 pywps 4.5.1 pyxdg 0.27 pyzmq 22.3.0 rasterio 1.3.0 redis 3.5.3 requests-oauthlib 1.3.0 requests-toolbelt 0.9.1 requests 2.25.1 s3transfer 0.5.0 schema 0.6.7 selenium 4.0.0a1 service-identity 18.1.0 sherlock 0.3.2 six 1.16.0 smart-open 5.2.1 snuggs 1.4.7 sortedcontainers 2.1.0 soupsieve 2.3.1 sqlparse 0.4.2 sympy 1.9 systemd-python 234 tblib 1.7.0 tenacity 6.3.1 terminado 0.13.1 testpath 0.5.0 threadpoolctl 3.1.0 timeout-decorator 0.5.0 tinydb 3.15.2 toml 0.10.2 tomlkit 0.9.2 toolz 0.11.2 tornado 6.1 tqdm 4.57.0 traitlets 5.1.1 traittypes 0.2.1 typing-extensions 3.10.0.2 tzlocal 2.1 ua-parser 0.10.0 uamqp 1.5.1 ubuntu-advantage-tools 27.7 ubuntu-drivers-common 0.0.0 ufoLib2 0.13.1 ufw 0.36.1 unattended-upgrades 0.1 unicodecsv 0.14.1 unicodedata2 14.0.0 uritemplate 3.0.1 urllib3 1.26.5 usb-creator 0.3.7 user-agents 2.2.0 vine 5.0.0 wadllib 1.3.6 wcwidth 0.2.5 webencodings 0.5.1 websocket-client 1.2.3 websockets 9.1 widgetsnbextension 2.0.0 wrapt 1.13.3 wxPython 4.0.7 xarray 0.16.1 xdg 5 xkit 0.0.0 xmljson 0.1.9 xmltodict 0.12.0 xyzservices 2022.6.0 yarl 1.7.2 zict 2.0.0 zipp 1.0.0 zipstream 1.1.4 zope.interface 5.4.0 django-allauth 0.47.0 django-appconf 1.0.3 django-autocomplete-light 3.5.1 django-bootstrap3-datetimepicker-2 2.8.2 django-celery-beat 2.2.1 django-celery-results 2.0.0 django-cors-headers 3.11.0 django-downloadview 2.3.0 django-filter 2.4.0 django-floppyforms 1.9.0 django-forms-bootstrap 3.1.0 django-geonode-mapstore-client 3.3.2 django-grappelli 2.15.1 django-guardian 2.4.0 django-haystack 3.1.1 django-imagekit 4.1.0 django-invitations 1.9.3 django-ipware 4.0.0 django-js-asset 1.2.2 django-jsonfield-backport 1.0.2 django-leaflet 0.27.1 django-markdownify 0.9.1 django-model-utils 0.0.0 django-modeltranslation 0.17.5 django-mptt 0.13.2 django-polymorphic 3.1.0 django-recaptcha 2.0.6 django-storages 1.12.3 django-taggit 2.1.0 django-tastypie 0.14.4 django-timezone-field 5.0 django-tinymce 3.3.0 django-treebeard 4.5.1 django-user-agents 0.4.0 django-uuid-upload-path 1.0.0 django-widget-tweaks 1.4.8 djangorestframework-gis 0.18 djangorestframework-guardian 0.3.0 djangorestframework 3.12.4 azure-agrifood-farming 1.0.0b1 azure-ai-anomalydetector 3.0.0b3 azure-ai-formrecognizer 3.2.0b2 azure-ai-language-conversations 1.0.0b1 azure-ai-language-questionanswering 1.0.0 azure-ai-metricsadvisor 1.0.1 azure-ai-textanalytics 5.2.0b3 azure-ai-translation-document 1.0.0b6 azure-appconfiguration 1.3.0 azure-applicationinsights 0.1.0 azure-batch 11.0.0 azure-cognitiveservices-anomalydetector 0.3.0 azure-cognitiveservices-formrecognizer 0.1.1 azure-cognitiveservices-knowledge-qnamaker 0.3.0 azure-cognitiveservices-language-luis 0.7.0 azure-cognitiveservices-language-spellcheck 2.0.0 azure-cognitiveservices-language-textanalytics 0.2.0 azure-cognitiveservices-personalizer 0.1.0 azure-cognitiveservices-search-autosuggest 0.2.0 azure-cognitiveservices-search-customimagesearch 0.2.0 azure-cognitiveservices-search-customsearch 0.3.0 azure-cognitiveservices-search-entitysearch 2.0.0 azure-cognitiveservices-search-imagesearch 2.0.0 azure-cognitiveservices-search-newssearch 2.0.0 azure-cognitiveservices-search-videosearch 2.0.0 azure-cognitiveservices-search-visualsearch 0.2.0 azure-cognitiveservices-search-websearch 2.0.0 azure-cognitiveservices-vision-computervision 0.9.0 azure-cognitiveservices-vision-contentmoderator 1.0.0 azure-cognitiveservices-vision-customvision 3.1.0 azure-cognitiveservices-vision-face 0.5.0 azure-common 1.1.28 azure-communication-chat 1.1.0 azure-communication-identity 1.0.1 azure-communication-networktraversal 1.0.0b1 azure-communication-phonenumbers 1.0.1 azure-communication-sms 1.0.1 azure-confidentialledger 1.0.0b1 azure-containerregistry 1.0.0b7 azure-core 1.20.1 azure-data-tables 12.1.1 azure-digitaltwins-core 1.1.0 azure-eventgrid 4.7.0 azure-eventhub-checkpointstoreblob-aio 1.1.4 azure-eventhub-checkpointstoreblob 1.1.4 azure-eventhub-checkpointstoretable 1.0.0b1 azure-eventhub 5.6.2 azure-graphrbac 0.61.1 azure-identity 1.7.1 azure-iot-deviceupdate 1.0.0b1 azure-iot-modelsrepository 1.0.0b2 azure-keyvault-administration 4.1.0b2 azure-keyvault-certificates 4.4.0b2 azure-keyvault-keys 4.5.0b5 azure-keyvault-secrets 4.4.0b2 azure-keyvault 4.1.0 azure-loganalytics 0.1.0 azure-media-analytics-edge 1.0.0b1 azure-media-videoanalyzer-edge 1.0.0b3 azure-messaging-webpubsubservice 1.0.0b3 azure-mgmt-advisor 9.0.0 azure-mgmt-agfood 1.0.0b1 azure-mgmt-agrifood 1.0.0b1 azure-mgmt-alertsmanagement 1.0.0 azure-mgmt-apimanagement 2.1.0 azure-mgmt-appconfiguration 2.0.0 azure-mgmt-applicationinsights 1.0.0 azure-mgmt-appplatform 6.1.0 azure-mgmt-attestation 1.0.0 azure-mgmt-authorization 2.0.0 azure-mgmt-automanage 1.0.0b2 azure-mgmt-automation 1.1.0b1 azure-mgmt-avs 7.0.0b1 azure-mgmt-azureadb2c 1.0.0b1 azure-mgmt-azurearcdata 1.0.0 azure-mgmt-azurestack 1.0.0 azure-mgmt-azurestackhci 6.1.0b1 azure-mgmt-baremetalinfrastructure 1.0.0 azure-mgmt-batch 16.0.0 azure-mgmt-batchai 7.0.0b1 azure-mgmt-billing 6.0.0 azure-mgmt-botservice 1.0.0 azure-mgmt-cdn 11.0.0 azure-mgmt-changeanalysis 1.0.0 azure-mgmt-chaos 1.0.0b2 azure-mgmt-cognitiveservices 12.0.0 azure-mgmt-commerce 6.0.0 azure-mgmt-communication 1.0.0 azure-mgmt-compute 23.1.0 azure-mgmt-confidentialledger 1.0.0b1 azure-mgmt-confluent 2.0.0b1 azure-mgmt-consumption 8.0.0 azure-mgmt-containerinstance 9.1.0 azure-mgmt-containerregistry 8.2.0 azure-mgmt-containerservice 16.3.0 azure-mgmt-core 1.3.0 azure-mgmt-cosmosdb 7.0.0b2 azure-mgmt-costmanagement 3.0.0 azure-mgmt-customproviders 1.0.0 azure-mgmt-databox 1.0.0 azure-mgmt-databoxedge 1.0.0 azure-mgmt-databricks 1.1.0b1 azure-mgmt-datadog 2.0.0 azure-mgmt-datafactory 2.0.0 azure-mgmt-datalake-analytics 0.6.0 azure-mgmt-datalake-store 1.0.0 azure-mgmt-datamigration 10.0.0 azure-mgmt-dataprotection 1.0.0b1 azure-mgmt-datashare 1.0.0 azure-mgmt-deploymentmanager 1.0.0 azure-mgmt-deviceupdate 1.0.0b3 azure-mgmt-devspaces 1.0.0b1 azure-mgmt-devtestlabs 9.0.0 azure-mgmt-digitaltwins 6.0.0 azure-mgmt-dns 8.0.0 azure-mgmt-documentdb 0.1.3 azure-mgmt-edgegateway 0.1.0 azure-mgmt-edgeorder 1.0.0b1 azure-mgmt-elastic 1.0.0 azure-mgmt-eventgrid 9.0.0 azure-mgmt-eventhub 10.0.0 azure-mgmt-extendedlocation 1.0.0 azure-mgmt-fluidrelay 1.0.0b1 azure-mgmt-frontdoor 1.0.0 azure-mgmt-guestconfig 1.0.0b1 azure-mgmt-hanaonazure 1.0.0 azure-mgmt-hdinsight 9.0.0 azure-mgmt-healthbot 1.0.0b1 azure-mgmt-healthcareapis 1.1.0b1 azure-mgmt-hybridcompute 7.0.0 azure-mgmt-hybridkubernetes 1.1.0 azure-mgmt-hybridnetwork 1.0.0 azure-mgmt-imagebuilder 1.0.0b1 azure-mgmt-iotcentral 9.0.0b1 azure-mgmt-iothub 2.1.0 azure-mgmt-iothubprovisioningservices 1.0.0 azure-mgmt-keyvault 9.2.0 azure-mgmt-kubernetesconfiguration 1.0.0b1 azure-mgmt-kusto 2.1.0 azure-mgmt-labservices 1.0.0 azure-mgmt-loganalytics 11.0.0 azure-mgmt-logic 9.0.0 azure-mgmt-logz 1.0.0 azure-mgmt-machinelearningcompute 1.0.0b1 azure-mgmt-machinelearningservices 1.0.0 azure-mgmt-maintenance 2.0.0 azure-mgmt-managedservices 6.0.0 azure-mgmt-managementgroups 1.0.0 azure-mgmt-managementpartner 1.0.0 azure-mgmt-maps 2.0.0 azure-mgmt-marketplaceordering 1.1.0 azure-mgmt-media 8.0.0 azure-mgmt-mixedreality 1.0.0 azure-mgmt-monitor 2.0.0 azure-mgmt-msi 6.0.0b1 azure-mgmt-netapp 5.1.0 azure-mgmt-network 19.2.0 azure-mgmt-notificationhubs 7.0.0 azure-mgmt-operationsmanagement 1.0.0 azure-mgmt-peering 1.0.0 azure-mgmt-policyinsights 1.1.0b1 azure-mgmt-portal 1.0.0 azure-mgmt-powerbidedicated 1.0.0 azure-mgmt-powerbiembedded 2.0.0 azure-mgmt-privatedns 1.0.0 azure-mgmt-purview 1.0.0 azure-mgmt-quantum 1.0.0b2 azure-mgmt-quota 1.0.0b2 azure-mgmt-rdbms 10.0.0 azure-mgmt-recoveryservices 2.0.0 azure-mgmt-recoveryservicesbackup 3.0.0 azure-mgmt-recoveryservicessiterecovery 1.0.0b1 azure-mgmt-redhatopenshift 1.0.0 azure-mgmt-redis 13.0.0 azure-mgmt-redisenterprise 1.0.0 azure-mgmt-regionmove 1.0.0b1 azure-mgmt-relay 1.1.0 azure-mgmt-reservations 1.0.0 azure-mgmt-resource 20.0.0 azure-mgmt-resourcegraph 8.1.0b1 azure-mgmt-resourcehealth 1.0.0b1 azure-mgmt-resourcemover 1.1.0b2 azure-mgmt-scheduler 7.0.0b1 azure-mgmt-search 8.0.0 azure-mgmt-security 2.0.0b1 azure-mgmt-securityinsight 1.0.0b1 azure-mgmt-serialconsole 1.0.0 azure-mgmt-servermanager 2.0.0 azure-mgmt-servicebus 7.1.0 azure-mgmt-servicefabric 2.0.0 azure-mgmt-servicefabricmanagedclusters 1.0.0 azure-mgmt-servicelinker 1.0.0b1 azure-mgmt-signalr 1.0.0 azure-mgmt-sql 3.0.1 azure-mgmt-sqlvirtualmachine 1.0.0b1 azure-mgmt-storage 19.0.0 azure-mgmt-storagecache 1.1.0 azure-mgmt-storageimportexport 1.0.0b1 azure-mgmt-storagepool 1.0.0 azure-mgmt-storagesync 1.0.0 azure-mgmt-streamanalytics 1.0.0rc1 azure-mgmt-subscription 1.0.0 azure-mgmt-support 6.0.0 azure-mgmt-synapse 2.1.0b2 azure-mgmt-testbase 1.0.0b1 azure-mgmt-timeseriesinsights 1.0.0 azure-mgmt-trafficmanager 1.0.0b1 azure-mgmt-videoanalyzer 1.0.0b3 azure-mgmt-vmwarecloudsimple 1.0.0b1 azure-mgmt-web 5.0.0 azure-mgmt-webpubsub 1.0.0 azure-mgmt-workloadmonitor 1.0.0b2 azure-mixedreality-authentication 1.0.0b1 azure-monitor-opentelemetry-exporter 1.0.0b6 azure-monitor-query 1.0.1 azure-purview-administration 1.0.0b2 azure-purview-catalog 1.0.0b3 azure-purview-scanning 1.0.0b3 azure-schemaregistry-avroserializer 1.0.0b4 azure-schemaregistry 1.0.0 azure-search-documents 11.3.0b5 azure-security-attestation 1.0.1 azure-servicebus 7.4.0 azure-servicefabric 8.0.0.0 azure-servicemanagement-legacy 0.20.7 azure-storage-blob-changefeed 12.0.0b3 azure-storage-blob 12.9.0 azure-storage-file-datalake 12.5.0 azure-storage-file-share 12.6.0 azure-storage-queue 12.1.6 azure-synapse-accesscontrol 0.8.0 azure-synapse-artifacts 0.10.0 azure-synapse-managedprivateendpoints 0.5.0 azure-synapse-monitoring 0.3.0 azure-synapse-spark 0.8.0 azure-synapse 0.1.1 ----------------------------- ---------------------------- Package Version
http://ci.terria.io/main/ https://datacube-core.readthedocs.io/en/latest/installation/database/setup.html https://docs.xarray.dev/en/stable/user-guide/plotting.html#robust https://github.com/opendatacube/datacube-core/releases/tag/1.8.7 https://github.com/opendatacube/odc-geo/issues https://github.com/opendatacube/odc-geo/releases/tag/v0.2.0 https://github.com/opendatacube/odc-stac/releases/tag/v0.3.0 https://github.com/opendatacube/odc-stac/wiki/Generating-Rotated-Images-to-Save-Space https://github.com/opendatacube/odc-tools/blob/develop/apps/dc_tools/odc/apps/dc_tools/fs_to_dc.py https://maps.digitalearth.africa/ https://odc-geo.readthedocs.io/en/latest/_api/odc.geo.xr.ODCExtensionDs.html https://odc-geo.readthedocs.io/en/latest/_api/odc.geo.xr.ODCExtension.html https://odc-geo.readthedocs.io/en/latest/raster-tools.html#plotting-on-a-map https://odc-stac-demo.netlify.app/ https://sandbox.digitalearth.africa/hub/login?next=%2Fhub%2F https://www.usgs.gov/landsat-missions/landsat-collection-2-level-2-science-products Alternately, you can configure the ODC connection to Postgres using environment variables: DB_HOSTNAME DB_USERNAME DB_PASSWORD DB_DATABASE
DevInstall via Paul Haesler on Slack #open-data-cube
# install numpy, pyproj and rasterio from Ubuntu distro via apt sudo apt-get install python3-numpy python3-rasterio python3-pyproj # Create virtualenv inheriting numpy and rasterio from system site-packages. cd ~/venvs virtualenv -p `which python3` --system-site-packages odc # Activate new virtualenv source odc/bin/activate # Compile and install cf-units from source: cd ~/src git clone git@github.com:SciTools/cf-units.git cf-units cd cf-units pip install -e . # install datacube-core from source (from pypi should be fine after next release) cd ~/src/datacube/core pip install -e .[all]
odc-geo
$ pip install --user --upgrade-strategy only-if-needed odc-geo
Collecting odc-geo
Downloading odc_geo-0.1.1-py3-none-any.whl (81 kB)
| | 81 kB 254 kB/s
Requirement already satisfied: affine in ./.local/lib/python3.8/site-packages (from odc-geo) (2.3.0)
Collecting cachetools
Downloading cachetools-5.0.0-py3-none-any.whl (9.1 kB)
Requirement already satisfied: numpy in ./.local/lib/python3.8/site-packages (from odc-geo) (1.21.5)
Requirement already satisfied: pyproj in /usr/lib/python3/dist-packages (from odc-geo) (3.2.1)
Requirement already satisfied: shapely in /usr/lib/python3/dist-packages (from odc-geo) (1.8.0)
Installing collected packages: cachetools, odc-geo
Successfully installed cachetools-5.0.0 odc-geo-0.1.1
odc-stac
## from STAC-load-ms-S2.ipynb import dask.distributed import dask.utils import numpy as np import planetary_computer as pc import xarray as xr from IPython.display import display from pystac_client import Client from odc.stac import configure_rio, stac_load ## from STAC-load-e84-aws.ipynb import dask.distributed import folium import folium.plugins import geopandas as gpd import shapely.geometry from IPython.display import HTML, display from pystac_client import Client from odc.stac import configure_rio, stac_load
Focal Notes
Focal Setup Steps
APT install into the system OS python, major, stable parts first.. as a set .. ;
## note gdal & postgis are installed at an earlier step via package dot-deb
## -------------------------------------------------------------------------
591 sudo apt install python3-dev python3-pip
405 sudo apt install ipython3 python3-scipy
apt install python3-pandas ## <== stale version currently
408 sudo apt install r-cran-sf ## match libgeos w/R language bindings
429 sudo apt install python3-shapely python3-fiona
614 sudo apt install --yes python3-geoalchemy2
##-- show the parts explicitly for Jupyter on Ubuntu via dot-deb ---------------
670 sudo apt install --yes jupyter-core jupyter-client jupyter-console jupyter-nbformat jupyter-nbconvert \
jupyter-notebook python3-ipykernel
673 sudo apt install python-notebook-doc jupyter
##--
sudo apt install python3-sklearn-lib python3-pyosmium
next
pip install --user --upgrade-strategy=only-if-needed py3-pkg
# installs to `~/.local/lib/python3.8/`
#
605 pip install --user wheel
835 pip install --user --upgrade --upgrade-strategy=only-if-needed pandas
836 pip install --user --upgrade --upgrade-strategy=only-if-needed scikit-image
837 pip install --user --upgrade --upgrade-strategy=only-if-needed imageio
838 pip install --user --upgrade --upgrade-strategy=only-if-needed numba
630 pip install --user folium
839 pip install --user --upgrade --upgrade-strategy=only-if-needed sentinelhub
867 pip install --user --upgrade --upgrade-strategy=only-if-needed openeo
841 pip install --user --upgrade --upgrade-strategy=only-if-needed eo-learn
853 pip install --user --upgrade --upgrade-strategy=only-if-needed ipyleaflet
606 pip install --user lightgbm ## libs also have an R interface, optional engines
all [ rasterio, networkx, sklearn, boto, more... ] into ~/.local/lib/python3.8/ (below)
note: https://pip.pypa.io/en/stable/cli/pip_install/#hash-checking-mode
next
$ mkdir -p ~/.jupyter/notebooks/ ;# default Jupyter notebooks & assets ; TODO will change.
this opinionated install will update/amend/evolve as installer code and more dot-debs are crafted later this year.
$ ./do_start_jupyter.sh #--------------------------- #!/bin/bash jupyter notebook --no-browser --ip=192.168.1.131 --notebook-dir=.jupyter/notebooks
~/.bashrc ##- PATH=$PATH:~/.local/bin
dbb@focalk:/etc$ cat lsb-release DISTRIB_ID=Ubuntu DISTRIB_RELEASE=20.04 DISTRIB_CODENAME=focal DISTRIB_DESCRIPTION="Ubuntu 20.04.3 LTS" #-- libgeos3.10.1 (3.10.1-1~focal0) libgdal-dev (3.4.0+dfsg-1~focal0) postgresql-12-postgis-3 (3.2.0+dfsg-1~focal0) PGSQL="120" GEOS="3.10.1-CAPI-1.16.0" PROJ="8.2.0" LIBXML="2.9.10" LIBJSON="0.13.1" #--
geoxarray
$ pip install --user rioxarray
Collecting rioxarray
Downloading rioxarray-0.10.3.tar.gz (47 kB)
| | 47 kB 272 kB/s
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing wheel metadata ... done
Requirement already satisfied: packaging in /usr/lib/python3/dist-packages (from rioxarray) (20.3)
Requirement already satisfied: xarray>=0.17 in ./.local/lib/python3.8/site-packages (from rioxarray) (0.21.1)
Requirement already satisfied: rasterio>=1.1.1 in ./.local/lib/python3.8/site-packages (from rioxarray) (1.2.10)
Requirement already satisfied: pyproj>=2.2 in /usr/lib/python3/dist-packages (from rioxarray) (3.2.1)
Requirement already satisfied: pandas>=1.1 in ./.local/lib/python3.8/site-packages (from xarray>=0.17->rioxarray) (1.4.1)
Requirement already satisfied: numpy>=1.18 in ./.local/lib/python3.8/site-packages (from xarray>=0.17->rioxarray) (1.21.5)
Requirement already satisfied: click-plugins in /usr/lib/python3/dist-packages (from rasterio>=1.1.1->rioxarray) (1.1.1)
Requirement already satisfied: cligj>=0.5 in /usr/lib/python3/dist-packages (from rasterio>=1.1.1->rioxarray) (0.5.0)
Requirement already satisfied: attrs in /usr/lib/python3/dist-packages (from rasterio>=1.1.1->rioxarray) (19.3.0)
Requirement already satisfied: certifi in /usr/lib/python3/dist-packages (from rasterio>=1.1.1->rioxarray) (2019.11.28)
Requirement already satisfied: click>=4.0 in /usr/lib/python3/dist-packages (from rasterio>=1.1.1->rioxarray) (7.0)
Requirement already satisfied: affine in ./.local/lib/python3.8/site-packages (from rasterio>=1.1.1->rioxarray) (2.3.0)
Requirement already satisfied: snuggs>=1.4.1 in ./.local/lib/python3.8/site-packages (from rasterio>=1.1.1->rioxarray) (1.4.7)
Requirement already satisfied: setuptools in /usr/lib/python3/dist-packages (from rasterio>=1.1.1->rioxarray) (45.2.0)
Requirement already satisfied: python-dateutil>=2.8.1 in ./.local/lib/python3.8/site-packages (from pandas>=1.1->xarray>=0.17->rioxarray) (2.8.2)
Requirement already satisfied: pytz>=2020.1 in ./.local/lib/python3.8/site-packages (from pandas>=1.1->xarray>=0.17->rioxarray) (2021.3)
Requirement already satisfied: pyparsing>=2.1.6 in /usr/lib/python3/dist-packages (from snuggs>=1.4.1->rasterio>=1.1.1->rioxarray) (2.4.6)
Requirement already satisfied: six>=1.5 in /usr/lib/python3/dist-packages (from python-dateutil>=2.8.1->pandas>=1.1->xarray>=0.17->rioxarray) (1.14.0)
Building wheels for collected packages: rioxarray
Building wheel for rioxarray (PEP 517) ... done
Created wheel for rioxarray: filename=rioxarray-0.10.3-py3-none-any.whl size=55624 sha256=925199c830a54ca5e9b02e89060e822e27014db5cbe601fd6b513d106fe66687
Stored in directory: /home/dbb/.cache/pip/wheels/42/71/40/298b7df47153454b8eb3ef8e5441dafa413e5a2d7ac1832b17
Successfully built rioxarray
Installing collected packages: rioxarray
Successfully installed rioxarray-0.10.3
OSM software stack
osm2pgsql and libosmium
# jammy universe
Thu May 26 07:55:03 PM PDT 2022
osm2pgsql 1.6.0+ds-1
libosmium2-dev Version: 2.18.0-1
Sat 26 Feb 2022 07:10:31 PM PST
# ubuntugis-unstable focal
osm2pgsql 1.3.0+ds-1~focal2
# git repo
osm2pgsql 1.6 lonvia committed on Jan 24 2022
osm2pgsql 1.5.1 Thu Jul 29 09:49:35 2021 +0200
# osm2pgsql cmake variables set
PROJ6_INCLUDE_DIR /usr/include
PROJ_LIBRARY /usr/lib/x86_64-linux-gnu/libproj.so
WITH_LUA ON
EXTERNAL_LIBOSMIUM FALSE
# from osm2pgsql/contrib/libosmium/
LIBOSMIUM_VERSION_STRING "2.17.0"
$ apt show libosmium2-dev => 2.17.2-1~focal0
## the result of apt installing Universe python3-pyosmium 2.15.3-1build2
$ osmium --version => osmium version 1.11.1, libosmium version 2.15.4
so, that is behind slightly from 2.17.x osmium headers
## rebuild osm2pgsql 1.6.0, better !
$ osm2pgsql --version
2022-02-26 20:14:19 osm2pgsql version 1.6.0
Build: Debug
Compiled using the following library versions:
Libosmium 2.17.3
Proj [API 6] 8.2.0
Lua 5.3.3
$ sudo make install
...
[ 95%] Built target osm2pgsql_lib
[100%] Built target osm2pgsql
Install the project...
-- Install configuration: "Debug"
-- Installing: /usr/local/bin/osm2pgsql
-- Installing: /usr/local/bin/osm2pgsql-replication
-- Installing: /usr/local/share/man/man1/osm2pgsql-replication.1
-- Installing: /usr/local/share/osm2pgsql/default.style
-- Installing: /usr/local/share/osm2pgsql/empty.style
-- Installing: /usr/local/share/man/man1/osm2pgsql.1
OSMnx
in tutorial https://pygis.io/docs/d_access_osm.html
code https://pypi.org/project/osmnx/#files
## osm2pgsql FLEX layout post-processing via LUA ./flex-config/ route-relations.lua unitable.lua geometries.lua data-types.lua attributes.lua compatible.lua simple.lua places.lua generic.lua with-schema.lua ./tests/data/ test_output_flex_multigeom_polygon.lua test_output_flex_way.lua test_output_flex_area_3857.lua test_output_flex_attr.lua test_output_flex_stage2.lua test_output_flex_nocluster.lua test_output_flex_multigeom_multipolygon_split.lua test_output_flex_multigeom.lua test_output_flex_multigeom_multipolygon.lua test_output_flex_nodes.lua test_output_flex_area_4326.lua test_output_flex_relation_combinations.lua test_output_flex_nogeom.lua test_output_flex_area.lua test_output_flex_lua_fail.lua test_output_flex_bbox.lua test_output_flex_types.lua test_output_flex_area_mix.lua test_output_flex_relation_changes.lua test_output_flex_schema.lua test_output_flex_multigeom_geometry_split.lua test_output_flex_stage2_alt.lua test_output_flex_uni.lua test_output_flex.lua test_output_flex_validgeom.lua test_output_flex_line.lua test_output_flex_invalid_geom.lua test_output_flex_multigeom_geometry.lua test_output_flex_relations.lua
## a full list of osmium verbs osmium-add-locations-to-ways osmium-export osmium-merge-changes osmium-apply-changes osmium-extract osmium-query-locations-index osmium-cat osmium-file-formats osmium-renumber osmium-changeset-filter osmium-fileinfo osmium-show osmium-check-refs osmium-getid osmium-sort osmium-create-locations-index osmium-getparents osmium-tags-filter osmium-derive-changes osmium-index-types osmium-time-filter osmium-diff osmium-merge
Focal Jupyter Overview
Sat 19 Feb 2022 07:18:48 PM PST
$ jupyter --version
jupyter core : 4.6.3
jupyter-notebook : 6.0.3
qtconsole : not installed
ipython : 7.13.0
ipykernel : 5.2.0
jupyter client : 6.1.2
jupyter lab : not installed
nbconvert : 5.6.1
ipywidgets : 6.0.0
nbformat : 5.0.4
traitlets : 4.3.3
##-------------------------------
Python version: 3.8.10 (default, Nov 26 2021, 20:14:08) [GCC 9.3.0]
pandas version: 0.25.3 <== a weak spot in this setup
matplotlib version: 3.1.2
NumPy version: 1.17.4
SciPy version: 1.3.3
IPython version: 7.13.0
scikit-learn version: 1.0.2
##-----------------------------------------
dbb@focalk:~$ ipython3
Python 3.8.10 (default, Nov 26 2021, 20:14:08)
Type 'copyright', 'credits' or 'license' for more information
IPython 7.13.0 -- An enhanced Interactive Python. Type '?' for help.
In [1]: import sklearn
In [2]: from sklearn import show_versions
In [3]: show_versions()
System:
python: 3.8.10 (default, Nov 26 2021, 20:14:08) [GCC 9.3.0]
executable: /usr/bin/python3
machine: Linux-5.13.0-30-generic-x86_64-with-glibc2.29
Python dependencies:
pip: 20.0.2
setuptools: 45.2.0
sklearn: 1.0.2
numpy: 1.17.4
scipy: 1.3.3
Cython: 0.29.14
pandas: 0.25.3 <== a weak spot in this setup
matplotlib: 3.1.2
joblib: 1.1.0
threadpoolctl: 3.1.0
Built with OpenMP: True
--
dbb@focalk:~$ jupyter --paths
config:
/home/dbb/.jupyter
/usr/local/etc/jupyter
/etc/jupyter
data:
/home/dbb/.local/share/jupyter
/usr/local/share/jupyter
/usr/share/jupyter
runtime:
/home/dbb/.local/share/jupyter/runtime
Focal APT Repos
dbb@focalk:/etc/apt$ cat sources.list # Automatically generated by Calamares on 2022-01-02. # Lines starting with "deb" are mandatory, while lines starting with "deb-src" # are for more detailed package information. ... ------------------------- dbb@focalk:/etc/apt$ cat sources.list.d/ubuntugis-ubuntu-ubuntugis-unstable-focal.list deb http://ppa.launchpad.net/ubuntugis/ubuntugis-unstable/ubuntu focal main deb-src http://ppa.launchpad.net/ubuntugis/ubuntugis-unstable/ubuntu focal main
eo-learn pip Fix-It Session
eolearn -- aprox. of python3 dependancies
import
: pandas as pd
: geopandas as gpd
: shapely. geometry, ops, wkt
: rasterio. features, transform, warp
: skimage. feature, filters.rank, morphology, segmentation
: boto3, cv2
: fiona
: graphviz
: ------------------------------------------
: abc, attr, base64
: collections, concurrent.futures
: dataclasses, datetime as dt
: dateutil, dateutil.parser
: fs, functools, gzip
: importlib, inspect, itertools as it
: json, logging, multiprocessing, os
: pickle, ray, re, registration
: tempfile, threading, time, traceback
: unittest.mock as mock, uuid, warnings
: --------------------------
##-----------------------------------------------------------------
$ pip install --user --upgrade --upgrade-strategy=only-if-needed pandas
Collecting pandas
Downloading pandas-1.4.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.7 MB)
| | 11.7 MB 79 kB/s
Collecting pytz>=2020.1
Downloading pytz-2021.3-py2.py3-none-any.whl (503 kB)
| | 503 kB 260 kB/s
Collecting python-dateutil>=2.8.1
Downloading python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
| | 247 kB 210 kB/s
Collecting numpy>=1.18.5; platform_machine != "aarch64" and platform_machine != "arm64" and python_version < "3.10"
Downloading numpy-1.22.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.8 MB)
| | 16.8 MB 11 kB/s
Requirement already satisfied, skipping upgrade: six>=1.5 in /usr/lib/python3/dist-packages (from python-dateutil>=2.8.1->pandas) (1.14.0)
ERROR: sentinelhub 3.4.4 has requirement pillow<=8.4.0,>=8.3.2, but you'll have pillow 7.0.0 which is incompatible.
ERROR: scikit-image 0.19.2 has requirement scipy>=1.4.1, but you'll have scipy 1.3.3 which is incompatible.
ERROR: numba 0.55.1 has requirement numpy<1.22,>=1.18, but you'll have numpy 1.22.2 which is incompatible.
ERROR: imageio 2.16.0 has requirement pillow>=8.3.2, but you'll have pillow 7.0.0 which is incompatible.
Installing collected packages: pytz, python-dateutil, numpy, pandas
Successfully installed numpy-1.22.2 pandas-1.4.1 python-dateutil-2.8.2 pytz-2021.3
$ pip install --user --upgrade --upgrade-strategy=only-if-needed scikit-image
Requirement already up-to-date: scikit-image in ./.local/lib/python3.8/site-packages (0.19.2)
Requirement already satisfied, skipping upgrade: imageio>=2.4.1 in ./.local/lib/python3.8/site-packages (from scikit-image) (2.16.0)
Requirement already satisfied, skipping upgrade: packaging>=20.0 in /usr/lib/python3/dist-packages (from scikit-image) (20.3)
Collecting scipy>=1.4.1
Downloading scipy-1.8.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (41.6 MB)
| | 41.6 MB 20 kB/s
Requirement already satisfied, skipping upgrade: pillow!=7.1.0,!=7.1.1,!=8.3.0,>=6.1.0 in /usr/lib/python3/dist-packages (from scikit-image) (7.0.0)
Requirement already satisfied, skipping upgrade: numpy>=1.17.0 in ./.local/lib/python3.8/site-packages (from scikit-image) (1.22.2)
Requirement already satisfied, skipping upgrade: PyWavelets>=1.1.1 in ./.local/lib/python3.8/site-packages (from scikit-image) (1.2.0)
Requirement already satisfied, skipping upgrade: networkx>=2.2 in ./.local/lib/python3.8/site-packages (from scikit-image) (2.6.3)
Requirement already satisfied, skipping upgrade: tifffile>=2019.7.26 in ./.local/lib/python3.8/site-packages (from scikit-image) (2022.2.9)
Installing collected packages: scipy
Successfully installed scipy-1.8.0
$ pip install --user --upgrade --upgrade-strategy=only-if-needed imageio
Requirement already up-to-date: imageio in ./.local/lib/python3.8/site-packages (2.16.0)
Requirement already satisfied, skipping upgrade: numpy>=1.20.0 in ./.local/lib/python3.8/site-packages (from imageio) (1.22.2)
Collecting pillow>=8.3.2
Downloading Pillow-9.0.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.3 MB)
| | 4.3 MB 99 kB/s
ERROR: sentinelhub 3.4.4 has requirement pillow<=8.4.0,>=8.3.2, but you'll have pillow 9.0.1 which is incompatible.
Installing collected packages: pillow
Successfully installed pillow-9.0.1
$ pip install --user --upgrade --upgrade-strategy=only-if-needed numba
Requirement already up-to-date: numba in ./.local/lib/python3.8/site-packages (0.55.1)
Collecting numpy<1.22,>=1.18
Downloading numpy-1.21.5-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB)
| | 15.7 MB 361 kB/s
Requirement already satisfied, skipping upgrade: setuptools in /usr/lib/python3/dist-packages (from numba) (45.2.0)
Requirement already satisfied, skipping upgrade: llvmlite<0.39,>=0.38.0rc1 in ./.local/lib/python3.8/site-packages (from numba) (0.38.0)
ERROR: sentinelhub 3.4.4 has requirement pillow<=8.4.0,>=8.3.2, but you'll have pillow 9.0.1 which is incompatible.
Installing collected packages: numpy
Attempting uninstall: numpy
Found existing installation: numpy 1.22.2
Uninstalling numpy-1.22.2:
Successfully uninstalled numpy-1.22.2
Successfully installed numpy-1.21.5
$ pip install --user --upgrade --upgrade-strategy=only-if-needed sentinelhub
Requirement already up-to-date: sentinelhub in ./.local/lib/python3.8/site-packages (3.4.4)
Collecting pillow<=8.4.0,>=8.3.2
Downloading Pillow-8.4.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.1 MB)
| | 3.1 MB 43 kB/s
Installing collected packages: pillow
Attempting uninstall: pillow
Found existing installation: Pillow 9.0.1
Uninstalling Pillow-9.0.1:
Successfully uninstalled Pillow-9.0.1
Successfully installed pillow-8.4.0
$ pip install --user --upgrade --upgrade-strategy=only-if-needed eo-learn
Requirement already up-to-date: eo-learn in ./.local/lib/python3.8/site-packages (1.0.0)
$ pip install --user --upgrade --upgrade-strategy=only-if-needed ipyleaflet
Collecting ipyleaflet
Downloading ipyleaflet-0.15.0-py2.py3-none-any.whl (3.3 MB)
| | 3.3 MB 364 kB/s
Collecting traittypes<3,>=0.2.1
Downloading traittypes-0.2.1-py2.py3-none-any.whl (8.6 kB)
Collecting xyzservices>=2021.8.1
Downloading xyzservices-2022.2.0-py3-none-any.whl (35 kB)
Collecting ipywidgets<8,>=7.6.0
Downloading ipywidgets-7.6.5-py2.py3-none-any.whl (121 kB)
| | 121 kB 338 kB/s
Requirement already satisfied, skipping upgrade: traitlets>=4.2.2 in /usr/lib/python3/dist-packages (from traittypes<3,>=0.2.1->ipyleaflet) (4.3.3)
Requirement already satisfied, skipping upgrade: ipykernel>=4.5.1 in /usr/lib/python3/dist-packages (from ipywidgets<8,>=7.6.0->ipyleaflet) (5.2.0)
Requirement already satisfied, skipping upgrade: ipython>=4.0.0; python_version >= "3.3" in /usr/lib/python3/dist-packages (from ipywidgets<8,>=7.6.0->ipyleaflet) (7.13.0)
Requirement already satisfied, skipping upgrade: ipython-genutils~=0.2.0 in /usr/lib/python3/dist-packages (from ipywidgets<8,>=7.6.0->ipyleaflet) (0.2.0)
Collecting jupyterlab-widgets>=1.0.0; python_version >= "3.6"
Downloading jupyterlab_widgets-1.0.2-py3-none-any.whl (243 kB)
| | 243 kB 376 kB/s
Collecting widgetsnbextension~=3.5.0
Downloading widgetsnbextension-3.5.2-py2.py3-none-any.whl (1.6 MB)
| | 1.6 MB 359 kB/s
Requirement already satisfied, skipping upgrade: nbformat>=4.2.0 in /usr/lib/python3/dist-packages (from ipywidgets<8,>=7.6.0->ipyleaflet) (5.0.4)
Requirement already satisfied, skipping upgrade: pexpect in /usr/lib/python3/dist-packages (from ipython>=4.0.0; python_version >= "3.3"->ipywidgets<8,>=7.6.0->ipyleaflet) (4.6.0)
Requirement already satisfied, skipping upgrade: notebook>=4.4.1 in /usr/lib/python3/dist-packages (from widgetsnbextension~=3.5.0->ipywidgets<8,>=7.6.0->ipyleaflet) (6.0.3)
Installing collected packages: traittypes, xyzservices, jupyterlab-widgets, widgetsnbextension, ipywidgets, ipyleaflet
Successfully installed ipyleaflet-0.15.0 ipywidgets-7.6.5 jupyterlab-widgets-1.0.2 traittypes-0.2.1 widgetsnbextension-3.5.2 xyzservices-2022.2.0
##jupyter nbextension enable --py --sys-prefix{?} ipyleaflet # can be skipped for notebook 5.3 and above
R setup
-- R language example ''Explainable Machine Learning for Land Cover Classification'' by Courage K. 2021 <pre> # Load the libraries example code from aigeolabs.com rm(list=ls()) library(sf) # represents simple features as native R objects library(rgdal) # interface to the “Geospatial Data Abstraction Library (GDAL) library(raster) # provides important functions for importing and handling raster data library(rasterVis) # provides functions to display raster objects library(dplyr) # provides basic data transformation functions library(ggplot2) # provides extension for visualizations library(mapview) # provides functions to visualize geospatial data library(randomForest) # implements Breiman’s random forest (RF) algorithm library(kernlab) # implements support vector machine (SVM) algorithm library(corrplot) # provides graphical display of a correlation matrix library(iml) # Keras-base tools for analyzing machine learning models library(caret) # machine learning helper ##--------------
OSGeoLive install_R.sh ver14 apt-get --assume-yes install r-base-core r-cran-sp r-cran-rpostgresql r-cran-udunits2 \ r-cran-ggplot2 r-cran-sf r-cran-lwgeom r-cran-spdata r-cran-rgdal r-cran-maptools
osgeolive 10 patch
in 2016, after being alerted -LINK- , I used pip to upgrade ipywidgets on the OSGeo-Live 10.0 base system.
The following is a modified patch file showing the changes in Python 2.7:
## Major components, version changed -ipykernel==4.2.2 +ipykernel==4.5.2 ... -ipython==4.0.2 +ipython==5.1.0 -ipywidgets==5.1.5 +ipywidgets==5.2.2 -jupyter-client==4.1.1 +jupyter-client==4.4.0 jupyter-console==4.1.0 -jupyter-core==4.0.6 +jupyter-core==4.2.1 -notebook==4.2.1 +notebook==4.3.0 -nbconvert==4.1.0 -nbformat==4.0.1 +nbconvert==5.0.0 +nbformat==4.2.0 +html5lib==0.9999999 -ptyprocess==0.5 +ptyprocess==0.5.1 -pexpect==4.0.1 -pickleshare==0.5 +pexpect==4.2.1 +pickleshare==0.7.4 -decorator==4.0.6 +decorator==4.0.10 ##-- misc other additions -- +backports-abc==0.5 +backports.shutil-get-terminal-size==1.0.0 +bleach==1.5.0 +certifi==2016.9.26 +configparser==3.5.0 -enum34==1.1.2 +entrypoints==0.2.2 +enum34==1.1.6 -mistune==0.7.1 +mistune==0.7.3 +pandocfilters==1.4.1 +pathlib2==2.1.0 +prompt-toolkit==1.0.9 -Pygments==2.1 +Pygments==2.1.3 -pyzmq==15.2.0 +pyzmq==16.0.2 +testpath==0.3 -tornado==4.2.1 -traitlets==4.1.0 +tornado==4.4.2 +traitlets==4.3.1 +wcwidth==0.1.7 -widgetsnbextension==1.2.3 +widgetsnbextension==1.2.6 ##-- misc other python libs (unchanged) anyjson==0.3.3 Biggus==0.13.0 Cartopy==0.14.2 celery==3.1.20 cf-units==1.0.0 colorama==0.3.7 cycler==0.9.0 defer==1.0.6 descartes==1.0.1 filemagic==1.6 Fiona==1.6.3 Iris==1.9.2 imposm==2.6.0 imposm.parser==1.0.7 ipyleaflet==0.2.0 jsonschema==2.5.1 meld==3.14.2 ModestMaps==1.4.6 netCDF4==1.2.4 Nik4==1.6.0 numpy==1.11.0 osmapi==0.6.2 OWSLib==0.10.3 pandas==0.17.1 psutil==3.4.2 psycopg2==2.6.1 pykml==0.1.1 pywps==3.2.5 rasterio==0.31.0 TileStache==1.49.8
Python Packages All
jammy Snapshot python install
osgeolive rc1 python3_all APScheduler==0.0.0 Automat==20.2.0 Babel==2.8.0 Brotli==1.0.9 Cartopy==0.0.0 Cheetah3==3.2.6 Deprecated==1.2.13 Django==2.2.24 EOxServer==1.1.2 Faker==0.9.3 Fiona==1.8.21 Flask==2.0.1 GDAL==3.4.3 GeoAlchemy2==0.10.2 GeoNode==3.3.2.post2 HeapDict==1.0.1 Jinja2==3.0.3 Mako==1.1.3 MapProxy==1.15.1 Markdown==3.3.6 MarkupSafe==2.0.1 Nik4==1.7.0 OWSLib==0.25.0 Pillow==9.0.1 PyGObject==3.42.1 PyHamcrest==2.0.2 PyJWT==2.3.0 PyNaCl==1.5.0 PyOpenGL==3.1.5 PyQt5-sip==12.9.1 PyQt5==5.15.6 PyYAML==5.4.1 Pygments==2.11.2 QScintilla==2.11.6 Rtree==0.9.7 SQLAlchemy==1.4.31 SecretStorage==3.3.1 Send2Trash==1.8.1b0 Shapely==1.8.0 Twisted==22.1.0 Unidecode==1.3.3 Werkzeug==2.0.2 adal==1.2.2 affine==2.3.0 aiohttp==3.8.1 aioredis==1.3.1 aiosignal==1.2.0 amqp==5.0.9 anyjson==0.3.3 appdirs==1.4.4 apt-xapian-index==0.49 argon2-cffi==21.1.0 async-timeout==4.0.1 attrs==21.2.0 avro==1.11.0 azure-agrifood-farming==1.0.0b1 azure-ai-anomalydetector==3.0.0b3 azure-ai-formrecognizer==3.2.0b2 azure-ai-language-conversations==1.0.0b1 azure-ai-language-questionanswering==1.0.0 azure-ai-metricsadvisor==1.0.1 azure-ai-textanalytics==5.2.0b3 azure-ai-translation-document==1.0.0b6 azure-appconfiguration==1.3.0 azure-applicationinsights==0.1.0 azure-batch==11.0.0 azure-cognitiveservices-anomalydetector==0.3.0 azure-cognitiveservices-formrecognizer==0.1.1 azure-cognitiveservices-knowledge-qnamaker==0.3.0 azure-cognitiveservices-language-luis==0.7.0 azure-cognitiveservices-language-spellcheck==2.0.0 azure-cognitiveservices-language-textanalytics==0.2.0 azure-cognitiveservices-personalizer==0.1.0 azure-cognitiveservices-search-autosuggest==0.2.0 azure-cognitiveservices-search-customimagesearch==0.2.0 azure-cognitiveservices-search-customsearch==0.3.0 azure-cognitiveservices-search-entitysearch==2.0.0 azure-cognitiveservices-search-imagesearch==2.0.0 azure-cognitiveservices-search-newssearch==2.0.0 azure-cognitiveservices-search-videosearch==2.0.0 azure-cognitiveservices-search-visualsearch==0.2.0 azure-cognitiveservices-search-websearch==2.0.0 azure-cognitiveservices-vision-computervision==0.9.0 azure-cognitiveservices-vision-contentmoderator==1.0.0 azure-cognitiveservices-vision-customvision==3.1.0 azure-cognitiveservices-vision-face==0.5.0 azure-common==1.1.28 azure-communication-chat==1.1.0 azure-communication-identity==1.0.1 azure-communication-networktraversal==1.0.0b1 azure-communication-phonenumbers==1.0.1 azure-communication-sms==1.0.1 azure-confidentialledger==1.0.0b1 azure-containerregistry==1.0.0b7 azure-core==1.20.1 azure-data-tables==12.1.1 azure-digitaltwins-core==1.1.0 azure-eventgrid==4.7.0 azure-eventhub-checkpointstoreblob-aio==1.1.4 azure-eventhub-checkpointstoreblob==1.1.4 azure-eventhub-checkpointstoretable==1.0.0b1 azure-eventhub==5.6.2 azure-graphrbac==0.61.1 azure-identity==1.7.1 azure-iot-deviceupdate==1.0.0b1 azure-iot-modelsrepository==1.0.0b2 azure-keyvault-administration==4.1.0b2 azure-keyvault-certificates==4.4.0b2 azure-keyvault-keys==4.5.0b5 azure-keyvault-secrets==4.4.0b2 azure-keyvault==4.1.0 azure-loganalytics==0.1.0 azure-media-analytics-edge==1.0.0b1 azure-media-videoanalyzer-edge==1.0.0b3 azure-messaging-webpubsubservice==1.0.0b3 azure-mgmt-advisor==9.0.0 azure-mgmt-agfood==1.0.0b1 azure-mgmt-agrifood==1.0.0b1 azure-mgmt-alertsmanagement==1.0.0 azure-mgmt-apimanagement==2.1.0 azure-mgmt-appconfiguration==2.0.0 azure-mgmt-applicationinsights==1.0.0 azure-mgmt-appplatform==6.1.0 azure-mgmt-attestation==1.0.0 azure-mgmt-authorization==2.0.0 azure-mgmt-automanage==1.0.0b2 azure-mgmt-automation==1.1.0b1 azure-mgmt-avs==7.0.0b1 azure-mgmt-azureadb2c==1.0.0b1 azure-mgmt-azurearcdata==1.0.0 azure-mgmt-azurestack==1.0.0 azure-mgmt-azurestackhci==6.1.0b1 azure-mgmt-baremetalinfrastructure==1.0.0 azure-mgmt-batch==16.0.0 azure-mgmt-batchai==7.0.0b1 azure-mgmt-billing==6.0.0 azure-mgmt-botservice==1.0.0 azure-mgmt-cdn==11.0.0 azure-mgmt-changeanalysis==1.0.0 azure-mgmt-chaos==1.0.0b2 azure-mgmt-cognitiveservices==12.0.0 azure-mgmt-commerce==6.0.0 azure-mgmt-communication==1.0.0 azure-mgmt-compute==23.1.0 azure-mgmt-confidentialledger==1.0.0b1 azure-mgmt-confluent==2.0.0b1 azure-mgmt-consumption==8.0.0 azure-mgmt-containerinstance==9.1.0 azure-mgmt-containerregistry==8.2.0 azure-mgmt-containerservice==16.3.0 azure-mgmt-core==1.3.0 azure-mgmt-cosmosdb==7.0.0b2 azure-mgmt-costmanagement==3.0.0 azure-mgmt-customproviders==1.0.0 azure-mgmt-databox==1.0.0 azure-mgmt-databoxedge==1.0.0 azure-mgmt-databricks==1.1.0b1 azure-mgmt-datadog==2.0.0 azure-mgmt-datafactory==2.0.0 azure-mgmt-datalake-analytics==0.6.0 azure-mgmt-datalake-store==1.0.0 azure-mgmt-datamigration==10.0.0 azure-mgmt-dataprotection==1.0.0b1 azure-mgmt-datashare==1.0.0 azure-mgmt-deploymentmanager==1.0.0 azure-mgmt-deviceupdate==1.0.0b3 azure-mgmt-devspaces==1.0.0b1 azure-mgmt-devtestlabs==9.0.0 azure-mgmt-digitaltwins==6.0.0 azure-mgmt-dns==8.0.0 azure-mgmt-documentdb==0.1.3 azure-mgmt-edgegateway==0.1.0 azure-mgmt-edgeorder==1.0.0b1 azure-mgmt-elastic==1.0.0 azure-mgmt-eventgrid==9.0.0 azure-mgmt-eventhub==10.0.0 azure-mgmt-extendedlocation==1.0.0 azure-mgmt-fluidrelay==1.0.0b1 azure-mgmt-frontdoor==1.0.0 azure-mgmt-guestconfig==1.0.0b1 azure-mgmt-hanaonazure==1.0.0 azure-mgmt-hdinsight==9.0.0 azure-mgmt-healthbot==1.0.0b1 azure-mgmt-healthcareapis==1.1.0b1 azure-mgmt-hybridcompute==7.0.0 azure-mgmt-hybridkubernetes==1.1.0 azure-mgmt-hybridnetwork==1.0.0 azure-mgmt-imagebuilder==1.0.0b1 azure-mgmt-iotcentral==9.0.0b1 azure-mgmt-iothub==2.1.0 azure-mgmt-iothubprovisioningservices==1.0.0 azure-mgmt-keyvault==9.2.0 azure-mgmt-kubernetesconfiguration==1.0.0b1 azure-mgmt-kusto==2.1.0 azure-mgmt-labservices==1.0.0 azure-mgmt-loganalytics==11.0.0 azure-mgmt-logic==9.0.0 azure-mgmt-logz==1.0.0 azure-mgmt-machinelearningcompute==1.0.0b1 azure-mgmt-machinelearningservices==1.0.0 azure-mgmt-maintenance==2.0.0 azure-mgmt-managedservices==6.0.0 azure-mgmt-managementgroups==1.0.0 azure-mgmt-managementpartner==1.0.0 azure-mgmt-maps==2.0.0 azure-mgmt-marketplaceordering==1.1.0 azure-mgmt-media==8.0.0 azure-mgmt-mixedreality==1.0.0 azure-mgmt-monitor==2.0.0 azure-mgmt-msi==6.0.0b1 azure-mgmt-netapp==5.1.0 azure-mgmt-network==19.2.0 azure-mgmt-notificationhubs==7.0.0 azure-mgmt-operationsmanagement==1.0.0 azure-mgmt-peering==1.0.0 azure-mgmt-policyinsights==1.1.0b1 azure-mgmt-portal==1.0.0 azure-mgmt-powerbidedicated==1.0.0 azure-mgmt-powerbiembedded==2.0.0 azure-mgmt-privatedns==1.0.0 azure-mgmt-purview==1.0.0 azure-mgmt-quantum==1.0.0b2 azure-mgmt-quota==1.0.0b2 azure-mgmt-rdbms==10.0.0 azure-mgmt-recoveryservices==2.0.0 azure-mgmt-recoveryservicesbackup==3.0.0 azure-mgmt-recoveryservicessiterecovery==1.0.0b1 azure-mgmt-redhatopenshift==1.0.0 azure-mgmt-redis==13.0.0 azure-mgmt-redisenterprise==1.0.0 azure-mgmt-regionmove==1.0.0b1 azure-mgmt-relay==1.1.0 azure-mgmt-reservations==1.0.0 azure-mgmt-resource==20.0.0 azure-mgmt-resourcegraph==8.1.0b1 azure-mgmt-resourcehealth==1.0.0b1 azure-mgmt-resourcemover==1.1.0b2 azure-mgmt-scheduler==7.0.0b1 azure-mgmt-search==8.0.0 azure-mgmt-security==2.0.0b1 azure-mgmt-securityinsight==1.0.0b1 azure-mgmt-serialconsole==1.0.0 azure-mgmt-servermanager==2.0.0 azure-mgmt-servicebus==7.1.0 azure-mgmt-servicefabric==2.0.0 azure-mgmt-servicefabricmanagedclusters==1.0.0 azure-mgmt-servicelinker==1.0.0b1 azure-mgmt-signalr==1.0.0 azure-mgmt-sql==3.0.1 azure-mgmt-sqlvirtualmachine==1.0.0b1 azure-mgmt-storage==19.0.0 azure-mgmt-storagecache==1.1.0 azure-mgmt-storageimportexport==1.0.0b1 azure-mgmt-storagepool==1.0.0 azure-mgmt-storagesync==1.0.0 azure-mgmt-streamanalytics==1.0.0rc1 azure-mgmt-subscription==1.0.0 azure-mgmt-support==6.0.0 azure-mgmt-synapse==2.1.0b2 azure-mgmt-testbase==1.0.0b1 azure-mgmt-timeseriesinsights==1.0.0 azure-mgmt-trafficmanager==1.0.0b1 azure-mgmt-videoanalyzer==1.0.0b3 azure-mgmt-vmwarecloudsimple==1.0.0b1 azure-mgmt-web==5.0.0 azure-mgmt-webpubsub==1.0.0 azure-mgmt-workloadmonitor==1.0.0b2 azure-mixedreality-authentication==1.0.0b1 azure-monitor-opentelemetry-exporter==1.0.0b6 azure-monitor-query==1.0.1 azure-purview-administration==1.0.0b2 azure-purview-catalog==1.0.0b3 azure-purview-scanning==1.0.0b3 azure-schemaregistry-avroserializer==1.0.0b4 azure-schemaregistry==1.0.0 azure-search-documents==11.3.0b5 azure-security-attestation==1.0.1 azure-servicebus==7.4.0 azure-servicefabric==8.0.0.0 azure-servicemanagement-legacy==0.20.7 azure-storage-blob-changefeed==12.0.0b3 azure-storage-blob==12.9.0 azure-storage-file-datalake==12.5.0 azure-storage-file-share==12.6.0 azure-storage-queue==12.1.6 azure-synapse-accesscontrol==0.8.0 azure-synapse-artifacts==0.10.0 azure-synapse-managedprivateendpoints==0.5.0 azure-synapse-monitoring==0.3.0 azure-synapse-spark==0.8.0 azure-synapse==0.1.1 azure-template==0.0.18b3 backcall==0.2.0 bcrypt==3.2.0 beautifulsoup4==4.10.0 billiard==3.6.4.0 bleach==4.1.0 blinker==1.4 boto3==1.20.34 botocore==1.23.34 branca==0.4.2 cachetools==5.0.0 celery==5.2.3 certifi==2020.6.20 cftime==1.5.2 chardet==4.0.0 charset-normalizer==2.0.6 click-didyoumean==0.0.3 click-plugins==1.1.1 click-repl==0.2.0 click==8.0.3 cligj==0.7.2 cloudpickle==2.0.0 colorama==0.4.4 command-not-found==0.3 constantly==15.1.0 coverage==6.2 croniter==1.0.15 cryptography==3.4.8 cupshelpers==1.0 cycler==0.11.0 dask==2022.1.0+dfsg datacube==0.0.0 dbus-python==1.2.18 decorator==4.4.2 defer==1.0.6 defusedxml==0.7.1 deprecation==2.0.7 descartes==1.1.0 distributed==2022.1.0+ds.1 distro-info===1.1build1 distro==1.7.0 dj-database-url==0.5.0 dj-pagination==2.5.0 django-allauth==0.47.0 django-appconf==1.0.3 django-autocomplete-light==3.5.1 django-bootstrap3-datetimepicker-2==2.8.2 django-celery-beat==2.2.1 django-celery-results==2.0.0 django-cors-headers==3.11.0 django-downloadview==2.3.0 django-filter==2.4.0 django-floppyforms==1.9.0 django-forms-bootstrap==3.1.0 django-geonode-mapstore-client==3.3.2 django-grappelli==2.15.1 django-guardian==2.4.0 django-haystack==3.1.1 django-imagekit==4.1.0 django-invitations==1.9.3 django-ipware==4.0.0 django-js-asset==1.2.2 django-jsonfield-backport==1.0.2 django-leaflet==0.27.1 django-markdownify==0.9.1 django-model-utils==0.0.0 django-modeltranslation==0.17.5 django-mptt==0.13.2 django-polymorphic==3.1.0 django-recaptcha==2.0.6 django-storages==1.12.3 django-taggit==2.1.0 django-tastypie==0.14.4 django-timezone-field==5.0 django-tinymce==3.3.0 django-treebeard==4.5.1 django-user-agents==0.4.0 django-uuid-upload-path==1.0.0 django-widget-tweaks==1.4.8 djangorestframework-gis==0.18 djangorestframework-guardian==0.3.0 djangorestframework==3.12.4 dnspython==2.1.0 docker==5.0.3 drf-extensions==0.7.1 drf-spectacular==0.21.1 drf-writable-nested==0.6.3 dynamic-rest==2.0.0 elasticsearch==7.16.2 entrypoints==0.4 ephem==4.1.3 factory-boy==2.11.1 flake8==4.0.1 flaky==3.7.0 folium==0.0.0 fonttools==4.29.1 frozenlist==1.2.0 fs==2.4.12 fsspec==2022.1.0 future==0.18.2 galternatives==1.0.8 geographiclib==1.52 geoip2==2.9.0 geojson==2.5.0 geolinks==0.2.0 geonode-announcements==2.0.2 geonode-avatar==5.0.7 geonode-dialogos==3.0.1 geonode-django-activity-stream==0.10.0 geonode-oauth-toolkit==2.2.2 geonode-user-messages==2.0.2 geopandas==0.10.2 geoserver-restconfig==2.0.7 gisdata==0.5.4 glob2==0.5 gn-arcrest==10.5.4 gn-gsimporter==2.0.1 gps==3.22 greenlet==1.1.2 gunicorn==20.1.0 hiredis==1.0.1 html5lib==1.1 httplib2==0.20.2 humanize==0.0.0 hyperlink==21.0.0 idna==3.3 importlib-metadata==4.6.4 incremental==21.3.0 inflection==0.3.1 iniconfig==1.1.1 invoke==1.4.1 iotop==0.6 ipykernel==6.7.0 ipyleaflet==0.17.0 ipython==7.31.1 ipython_genutils==0.2.0 ipywidgets==6.0.0 iso8601==1.0.2 isodate==0.6.1 itsdangerous==2.1.0 jdcal==1.0 jedi==0.18.0 jeepney==0.7.1 jmespath==0.10.0 joblib==0.17.0 jsonfield==3.1.0 jsonref==0.1 jsonschema==3.2.0 jupyter-client==7.1.2 jupyter-core==4.9.1 jupyter-packaging==0.11.1 jupyterlab-pygments==0.1.2 jwcrypto==1.0 keyring==23.5.0 kiwisolver==1.3.2 kombu==5.2.3 language-selector==0.1 lark-parser==0.12.0 launchpadlib==1.10.16 lazr.restfulclient==0.14.4 lazr.uri==1.0.6 locket==0.2.1 lubuntu-update-notifier==0.4.dev0 lxml==4.8.0 lz4==3.1.3+dfsg mapnik==3.0.23 mappyfile==0.9.7 mapscript==7.6.4 matplotlib-inline==0.1.3 matplotlib==3.5.1 maxminddb==2.0.3 mccabe==0.6.1 mercantile==1.1.5 mock==4.0.3 more-itertools==8.10.0 mpmath==0.0.0 msal-extensions==1.0.0 msal==1.17.0 msgpack==1.0.3 msrest==0.6.21 msrestazure==0.6.4 multidict==5.1.0 munch==2.5.0 nbclient==0.5.6 nbconvert==6.4.0 nbformat==5.1.3 nest-asyncio==1.5.4 netCDF4==1.5.8 netifaces==0.11.0 networkx==2.4 notebook==6.4.8 numpy==1.21.5 oauthlib==3.2.0 osmapi==3.0.0 osmium==3.2.0 packaging==21.3 palettable==3.3.0 pandas==1.3.5 pandocfilters==1.5.0 paramiko==2.9.3 parse-type==0.5.6 parse==1.19.0 parso==0.8.1 partd==1.2.0 pbr==5.8.0 pexpect==4.8.0 pickleshare==0.7.5 pilkit==2.0 pinax-notifications==6.0.0 pinax-ratings==4.0.0 plotly==5.4.0 pluggy==0.13.0 ply==3.11 portalocker==2.2.1 prometheus-client==0.9.0 prompt-toolkit==3.0.28 psutil==5.9.0 psycopg2==2.8.6 ptyprocess==0.7.0 py==1.10.0 pyOpenSSL==21.0.0 pyasn1-modules==0.2.1 pyasn1==0.4.8 pycairo==1.20.1 pycodestyle==2.8.0 pycountry==20.7.3 pycql==0.0.8 pycsw==2.6.1 pycups==2.0.1 pydantic==1.8.2 pyflakes==2.4.0 pygeoapi==0.12.0 pylibmc==1.5.2 pyows==0.2.6 pyparsing==2.4.7 pyproj==3.3.0 pyrsistent==0.18.1 pysal==2.1.0 pyserial==3.5 pyshp==2.2.0 pytest-bdd==3.2.1 pytest-django==3.5.1 pytest==6.2.5 python-apt==2.3.0+ubuntu2 python-crontab==2.6.0 python-dateutil==2.8.1 python-debian===0.1.43ubuntu1 python-etcd==0.4.5 python-memcached==1.58 python-mimeparse==1.6.0 python-slugify==4.0.0 python3-openid==3.2.0 pytz==2022.1 pywps==4.5.1 pyxdg==0.27 pyzmq==22.3.0 rasterio==1.3.0 redis==3.5.3 requests-oauthlib==1.3.0 requests-toolbelt==0.9.1 requests==2.25.1 s3transfer==0.5.0 schema==0.6.7 scikit-learn==0.23.2 scipy==1.8.0 seaborn==0.11.2 selenium==4.0.0a1 service-identity==18.1.0 sherlock==0.3.2 six==1.16.0 smart-open==5.2.1 snuggs==1.4.7 sortedcontainers==2.1.0 soupsieve==2.3.1 sqlparse==0.4.2 sympy==1.9 systemd-python==234 tblib==1.7.0 tenacity==6.3.1 terminado==0.13.1 testpath==0.5.0 threadpoolctl==3.1.0 timeout-decorator==0.5.0 tinydb==3.15.2 toml==0.10.2 tomlkit==0.9.2 toolz==0.11.2 tornado==6.1 tqdm==4.57.0 traitlets==5.1.1 traittypes==0.2.1 typing-extensions==3.10.0.2 tzlocal==2.1 ua-parser==0.10.0 uamqp==1.5.1 ubuntu-advantage-tools==27.7 ubuntu-drivers-common==0.0.0 ufoLib2==0.13.1 ufw==0.36.1 unattended-upgrades==0.1 unicodecsv==0.14.1 unicodedata2==14.0.0 uritemplate==3.0.1 urllib3==1.26.5 usb-creator==0.3.7 user-agents==2.2.0 vine==5.0.0 wadllib==1.3.6 wcwidth==0.2.5 webencodings==0.5.1 websocket-client==1.2.3 websockets==9.1 widgetsnbextension==2.0.0 wrapt==1.13.3 wxPython==4.0.7 xarray==0.16.1 xdg==5 xkit==0.0.0 xmljson==0.1.9 xmltodict==0.12.0 xyzservices==2022.6.0 yarl==1.7.2 zict==2.0.0 zipp==1.0.0 zipstream==1.1.4 zope.interface==5.4.0
Focal Snapshot local
Sat 26 Feb 2022 07:10:31 PM PST $ ls .local/lib/python3.8/site-packages/ | grep info | sed -e 's/\.dist-info//' aenum-3.1.8 affine-2.3.0 appdirs-1.4.4 bolt_python-0.7.1 boto-2.49.0 boto3-1.21.2 botocore-1.24.2 branca-0.4.2 charset_normalizer-2.0.12 dataclasses_json-0.5.6 Deprecated-1.2.13 eo_learn-1.0.0 eo_learn_core-1.0.0 eo_learn_coregistration-1.0.0 eo_learn_features-1.0.0 eo_learn_geometry-1.0.0 eo_learn_io-1.0.0 eo_learn_mask-1.0.0 eo_learn_ml_tools-1.0.0 eo_learn_visualization-1.0.0 folium-0.12.1.post1 fs-2.4.15 fs_s3fs-1.1.1 graphviz-0.19.1 imageio-2.16.0 ipyleaflet-0.15.0 ipywidgets-7.6.5 jmespath-0.10.0 joblib-1.1.0 jupyterlab_widgets-1.0.2 lightgbm-3.3.2 llvmlite-0.38.0 marshmallow-3.14.1 marshmallow_enum-1.5.1 mypy_extensions-0.4.3 networkx-2.6.3 numba-0.55.1 numpy-1.21.5 opencv_contrib_python_headless-4.5.5.62 openeo-0.9.2 pandas-1.4.1 Pillow-8.4.0 python_dateutil-2.8.2 pytz-2021.3 PyWavelets-1.2.0 rasterio-1.2.10 requests-2.27.1 requests_oauthlib-1.3.1 s3transfer-0.5.1 scikit_image-0.19.2 scikit_learn-1.0.2 scipy-1.8.0 sentinelhub-3.4.4 snuggs-1.4.7 threadpoolctl-3.1.0 thunder_python-1.4.2 thunder_registration-1.0.1 tifffile-2022.2.9 tqdm-4.62.3 traittypes-0.2.1 typing_extensions-4.1.1 typing_inspect-0.7.1 utm-0.7.0 widgetsnbextension-3.5.2 wrapt-1.13.3 xarray-0.21.1 xyzservices-2022.2.0