Osgeolive-jupyter

Focal Notes

dbb@focalk:/etc$ cat lsb-release 
DISTRIB_ID=Ubuntu
DISTRIB_RELEASE=20.04
DISTRIB_CODENAME=focal
DISTRIB_DESCRIPTION="Ubuntu 20.04.3 LTS"
#--
 PGSQL="120" GEOS="3.10.1-CAPI-1.16.0" PROJ="8.2.0" LIBXML="2.9.10" LIBJSON="0.13.1"
#--

                                    Sat 19 Feb 2022 07:18:48 PM PST
$ jupyter --version
jupyter core     : 4.6.3
jupyter-notebook : 6.0.3
qtconsole        : not installed
ipython          : 7.13.0
ipykernel        : 5.2.0
jupyter client   : 6.1.2
jupyter lab      : not installed
nbconvert        : 5.6.1
ipywidgets       : 6.0.0
nbformat         : 5.0.4
traitlets        : 4.3.3

##-------------------------------
Python version: 3.8.10 (default, Nov 26 2021, 20:14:08) [GCC 9.3.0]
pandas version: 0.25.3
matplotlib version: 3.1.2
NumPy version: 1.17.4
SciPy version: 1.3.3
IPython version: 7.13.0
scikit-learn version: 1.0.2
##-----------------------------------------
dbb@focalk:~$ ipython3
Python 3.8.10 (default, Nov 26 2021, 20:14:08) 
Type 'copyright', 'credits' or 'license' for more information
IPython 7.13.0 -- An enhanced Interactive Python. Type '?' for help.

In [1]: import sklearn                                                                                               
In [2]: from sklearn import show_versions                                                                            
In [3]: show_versions()                                                                                              

System:
    python: 3.8.10 (default, Nov 26 2021, 20:14:08)  [GCC 9.3.0]
executable: /usr/bin/python3
   machine: Linux-5.13.0-30-generic-x86_64-with-glibc2.29

Python dependencies:
          pip: 20.0.2
   setuptools: 45.2.0
      sklearn: 1.0.2
        numpy: 1.17.4
        scipy: 1.3.3
       Cython: 0.29.14
       pandas: 0.25.3      <== a weak spot in this setup
   matplotlib: 3.1.2
       joblib: 1.1.0
threadpoolctl: 3.1.0

Built with OpenMP: True
--
dbb@focalk:~$ jupyter --paths
config:
    /home/dbb/.jupyter
    /usr/local/etc/jupyter
    /etc/jupyter
data:
    /home/dbb/.local/share/jupyter
    /usr/local/share/jupyter
    /usr/share/jupyter
runtime:
    /home/dbb/.local/share/jupyter/runtime
--

Focal Setup Steps

  591  sudo apt install python3-dev python3-pip

  405  sudo apt install ipython3 python3-pandas python3-scipy
  408  sudo apt install r-cran-sf
  429  sudo apt install python3-shapely python3-fiona
  614  sudo apt install --yes python3-geoalchemy2

  670  sudo apt install --yes jupyter-core jupyter-client jupyter-console jupyter-nbformat jupyter-nbconvert jupyter-notebook python3-ipykernel
  673  sudo apt install python-notebook-doc jupyter

  605  pip install --user wheel
  606  pip install --user lightgbm
  616  pip install --user eo-learn
  630  pip install --user folium

all [ rasterio, networkx, sklearn, boto, more  ] into    ~/.local/lib/python-3.8/

$ ./do_jupyter.sh
#---------------------------
#!/bin/bash

jupyter notebook --no-browser --ip=192.168.1.131 --notebook-dir=.jupyter/notebooks

~/.bashrc

##-
PATH=$PATH:~/.local/bin

Focal APT Repos

dbb@focalk:/etc/apt$ cat sources.list
# Automatically generated by Calamares on 2022-01-02.
# Lines starting with "deb" are mandatory, while lines starting with "deb-src"
# are for more detailed package information.

## See http://help.ubuntu.com/community/UpgradeNotes for how to upgrade to
## newer versions of Lubuntu.
deb http://ubuntu.osuosl.org/ubuntu/ focal main restricted
deb-src http://ubuntu.osuosl.org/ubuntu/ focal main restricted

## Major bug fix updates produced after the final release of Lubuntu.
## Have you noticed a regression? Please report it!
## https://wiki.ubuntu.com/StableReleaseUpdates#Regressions

## Software from this repository is ENTIRELY UNSUPPORTED by the Ubuntu team.
## Also, please note that software in Universe WILL NOT receive any review or
## updates from the Ubuntu security team directly. Updates in this repository
## are provided by volunteers, but most come from Debian.
deb http://ubuntu.osuosl.org/ubuntu/ focal universe
deb-src http://ubuntu.osuosl.org/ubuntu/ focal universe

## Software from this repository is ENTIRELY UNSUPPORTED by the Ubuntu team,
## and may not be under a free licence. Please satisfy yourself as your rights
## to use the software. Also, please note that software in Multiverse WILL NOT
## receive any review or updates from the Ubuntu security team directly.
# deb http://us.archive.ubuntu.com/ubuntu/ focal multiverse
# deb-src http://us.archive.ubuntu.com/ubuntu/ focal multiverse
# deb http://us.archive.ubuntu.com/ubuntu/ focal-updates multiverse
# deb-src http://us.archive.ubuntu.com/ubuntu/ focal-updates multiverse

## Software from this repository contains tested security updates from the
## Ubuntu security team.
deb http://security.ubuntu.com/ubuntu focal-security main restricted
deb-src http://security.ubuntu.com/ubuntu focal-security main restricted
deb http://security.ubuntu.com/ubuntu focal-security universe
deb-src http://security.ubuntu.com/ubuntu focal-security universe
deb http://security.ubuntu.com/ubuntu focal-security multiverse
# deb-src http://security.ubuntu.com/ubuntu focal-security multiverse

## Software from this repository may not have been tested as extensively as
## software contained in the main release, although it includes newer versions
## of some applications which may provide useful features. Also, please note
## that software in Backports WILL NOT receive any review or updates from the
## Ubuntu security team.
deb http://ubuntu.osuosl.org/ubuntu/ focal-backports main restricted universe multiverse
deb-src http://ubuntu.osuosl.org/ubuntu/ focal-backports main restricted universe multiverse

## Uncomment the following two lines to add software from Canonical's
## "partner" repository.
## This software is not part of Ubuntu, but is offered by Canonical and the
## respective vendors as a service to Ubuntu users.
# deb http://archive.canonical.com/ubuntu focal partner
# deb-src http://archive.canonical.com/ubuntu focal partner

-------------------------

dbb@focalk:/etc/apt$ cat sources.list.d/ubuntugis-ubuntu-ubuntugis-unstable-focal.list

deb http://ppa.launchpad.net/ubuntugis/ubuntugis-unstable/ubuntu focal main
deb-src http://ppa.launchpad.net/ubuntugis/ubuntugis-unstable/ubuntu focal main