Difference between revisions of "DOI"
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Revision as of 09:54, 26 March 2024
Digital Object Identifiers (DOI)
Scope
- This wiki page summarises relevant facts about DOI and related persistent Identifiers (PID) for the OSGeo communities.
- A DOI is a persistent identifier (PID).
- More infomation about PID for OSGeo is available here in the wiki
Useful background information
- Introduction to DOI (NASA)
- DOI registration 101 @ UC Berkeley (wayback machine memento)
- Introduction to the Zenodo open access repository
- Zenodo FAQ
Howto information for GitHub Repo maintainers (source Zenodo FAQ)
My organizational repository does not show up on the GitHub list
"In order to see and archive your organizational repositories on Zenodo you will need to have "Admin" permissions on said repository, either as an Admin of the organization or an Admin of one of your organization's repositories. Additionally, please make sure that the OAuth application on GitHub is granting permissions not only to your personal repositories but also to your organizational ones - to verify that go to your GitHub OAuth settings in your profile, and click on the Zenodo application to see more details. Make sure that Zenodo is given access (green tick) to your organization under "Organization access".
After that, navigate to your Zenodo GitHub settings page and click the "Sync now" button at the top."
I made a GitHub release, but it does not show up on Zenodo.
"Make sure the repository was enabled before the release was made, otherwise feel free to contact ZENODO."
Is it possible to archive a GitHub repository, before it was enabled on Zenodo?
"Only the repositories which were enabled before a release was made will be archived automatically. If you want to archive some of your old releases, you can always download a release ZIP from GitHub and upload it to Zenodo using our web interface as a regular upload."
How to change the default metadata for my GitHub releases?
"You can include metadata in a .zenodo.json file at the root of your GitHub repository. This file's contents should be in line with the Zenodo deposit metadata schema and will be used to update the metadata from future GitHub releases. For more information on how to create a .zenodo.json file, you can have a look at our GitHub integration documenation."
Do you support other software metadata files, like CITATION.cff or codemeta.json?
"Part of our plans and ongoing work is to take into account or improve our integration of other software metadata schemas such as the Citation File Format (CFF) and CodeMeta. We are working closely with our users and scholarly software and citation communities to figure out exactly when, in what form, and how all these different metadata schemas and their files will be integrated into Zenodo."
How does a CITATION.cff file affect the metadata of my GitHub release?
"When we find a CITATION.cff file in your GitHub repository's root folder, we make a best-effort attempt at parsing Zenodo-compatible metadata from it. For backwards-compatibility, if you have a .zenodo.json file in the repository, only the .zenodo.json's metadata will be taken into account. Of course, any existing valid CITATION.cff file will still be used to display the citation box on the GitHub repository page, but will not affect in any way the metadata we extract for your published release Zenodo record."
Do you support versioning for already existing records?
"Yes. However, for uploads published before the 30th of May 2017, you have to first upgrade your record to support versioning. This is done by clicking the “Upgrade to versioned record” button on the record page.
IMPORTANT If you have previously uploaded multiple versions of an upload as individual records on Zenodo, then DO NOT click the button to upgrade your record with versioning support. Please contact us so we can link the records under one versioning scheme.
Clicking the “Upgrade to versioned record” button on any of the records you would like to link, will irreversibly register them as individually-versioned records.
If you used the GitHub integration to archive your software on Zenodo, then we have already migrated and linked your records to support versioning."
Usage examples for people writing articles
DOI
How to include a DOI-based reference to a LaTEX/Overleaf document.
BEWARE: As of now (20230327) it remains to be confirmed that DOI-tags in citations work without the https://doi.org-header. This might (just) reuslt in human readable information, but not machine-readable.
Publication DOI
@article{Chen_2003_Giants, title={On the Shoulders of Giants}, url={\url{https://doi.org/10.1007/978-1-4471-0051-5_5}}, DOI={10.1007/978-1-4471-0051-5_5}, journal={Mapping Scientific Frontiers: The Quest for Knowledge Visualization}, publisher={Springer London}, author={Chen, Chaomei}, year={2003}, pages={135–166} }
Video DOI
@article{Inman_1987, title={GRASS}, url={https://av.tib.eu/media/12963}, DOI={10.5446/12963}, abstractNote={Video presentation explaining the features and capabilities of this computer-based mapping system.}, publisher={Moving Pictures, US Army Construction Engineering Research Laboratory}, author={Inman, Roger J.}, year={1987}, language={en} }
Software Concept DOI (a reference to a software project as a whole)
@article{GRASS_CONCEPT_DOI, title={OSGeo/grass: GRASS GIS 8.2.0}, url={https://zenodo.org/record/5176030}, DOI={10.5281/ZENODO.5176030}, abstractNote={ .. CONTENT OMMITTED FOR BREVITY ..}, year={2022}, month={Jun} }
Software Version DOI (a reference to a particular software release)
@article{QGIS_Contributors_2022, title={QGIS}, url={https://doi.org/10.5281/zenodo.5869837}, DOI={10.5281/ZENODO.5869837}, publisher={Zenodo}, author={QGIS Contributors}, year={2022}, month={Jan} }
Added-value services based on DOI
DOI available for OSGeo Projects
<Add your project DOI here, while maintaining alphabetical order>
DOI-based Citations of OSGeo Projects in Scientific Literature
The following citation listings for OSGeo projects are curated both manually and using automated data-harvesting from CrossRef. The list is currently updated annually. This listing is not complete. The total number of scientific publications referencing OSGeo projects by their DOI is most likely much larger. Publications such as FOSS4G Proceedings in The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences are currently not referenced by CrossRef and must be added manually.
actinia
| Date | Type | Publisher | Journal | Title | Publication DOI | Source |
|---|---|---|---|---|---|---|
| 2022-06-24 | book_content | Springer Science and Business Media LLC | Springer Handbook of Geographic Information | Open Source – GIS | https://doi.org/10.1007/978-3-030-53125-6_30 | Crossref |
GDAL
| Date | Type | Publisher | Journal | Title | Publication DOI | Source |
|---|---|---|---|---|---|---|
| 2024-01-23 | journal_article | American Geophysical Union (AGU) | Earth and Space Science | Mapping Daily Air Temperature Over the Hawaiian Islands From 1990 to 2021 via an Optimized Piecewise Linear Regression Technique | https://doi.org/10.1029/2023EA002851 | Source: Crossref |
| 2024-01-02 | journal_article | Elsevier BV | Ecological Indicators | New approach to assess forest fragmentation based on multiscale similarity index | https://doi.org/10.1016/j.ecolind.2023.111530 | Source: Crossref |
| 2024-01-02 | journal_article | American Geophysical Union (AGU) | GeoHealth | Premature Deaths Due To Heat Exposure: The Potential Effects of Neighborhood‐Level Versus City‐Level Acclimatization Within US Cities | https://doi.org/10.1029/2023GH000970 | Source: Crossref |
| 2023-12-19 | journal_article | American Geophysical Union (AGU) | Earth and Space Science | High‐Resolution Maps of Near‐Surface Permafrost for Three Watersheds on the Seward Peninsula, Alaska Derived From Machine Learning | https://doi.org/10.1029/2023EA003015 | Source: Crossref |
| 2023-10-20 | journal_article | MDPI AG | Sensors | Comparing NISAR (Using Sentinel-1), USDA/NASS CDL, and Ground Truth Crop/Non-Crop Areas in an Urban Agricultural Region | https://doi.org/10.3390/s23208595 | Source: Crossref |
| 2023-07-29 | journal_article | Springer Science and Business Media LLC | Scientific Reports | First estimates of fine root production in tropical peat swamp and terra firme forests of the central Congo Basin | https://doi.org/10.1038/s41598-023-38409-x | Source: Crossref |
| 2023-04-19 | journal_article | Geomatik | Geomatik | Yersel referans verilerinin doğruluğunun çok zamanlı Sentinel-2 uydu görüntüleri ile araştırılması: Arpa ve Buğday örneği | https://doi.org/10.29128/geomatik.1210252 | Source: Crossref |
| 2023-03-28 | journal_article | Wiley | Crop Science | Endemic crop wild relatives in Chile towards the end of the 21st century: Protected areas and agricultural expansion | https://doi.org/10.1002/csc2.20962 | Source: Crossref |
| 2023-03-17 | journal_article | IOP Publishing | Environmental Research Communications | Validation of FABDEM, a global bare-earth elevation model, against UAV-lidar derived elevation in a complex forested mountain catchment | https://doi.org/10.1088/2515-7620/acc56d | Source: Crossref |
| 2023-01-20 | journal_article | Springer Science and Business Media LLC | Scientific Data | A 1.2 Billion Pixel Human-Labeled Dataset for Data-Driven Classification of Coastal Environments | https://doi.org/10.1038/s41597-023-01929-2 | Source: Crossref |
| 2022-11-08 | journal_article | MDPI AG | Remote Sensing | Assessing Changes in Boreal Vegetation of Kola Peninsula via Large-Scale Land Cover Classification between 1985 and 2021 | https://doi.org/10.3390/rs14215616 | Source: Crossref |
| 2022-10-10 | journal_article | Copernicus GmbH | Natural Hazards and Earth System Sciences | Automated snow avalanche release area delineation in data-sparse, remote, and forested regions | https://doi.org/10.5194/nhess-22-3247-2022 | Source: Crossref |
| 2022-06-27 | journal_article | MDPI AG | Sensors | A Novel Remote Sensing Image Registration Algorithm Based on Feature Using ProbNet-RANSAC | https://doi.org/10.3390/s22134791 | Source: Crossref |
| 2022-06-24 | book_content | Springer Science and Business Media LLC | Springer Handbook of Geographic Information | Open Source – GIS | https://doi.org/10.1007/978-3-030-53125-6_30 | Source: Crossref |
| 2022-04-16 | journal_article | MDPI AG | Agronomy | Remote Sensing of Maize Plant Height at Different Growth Stages Using UAV-Based Digital Surface Models (DSM) | https://doi.org/10.3390/agronomy12040958 | Source: Crossref |
| 2022-02-23 | journal_article | Copernicus GmbH | Earth System Science Data | EcoDes-DK15: high-resolution ecological descriptors of vegetation and terrain derived from Denmark's national airborne laser scanning data set | https://doi.org/10.5194/essd-14-823-2022 | Source: Crossref |
Geopaparazzi
| Date | Type | Publisher | Journal | Title | Publication DOI | Source |
|---|---|---|---|---|---|---|
| 2022-06-24 | book_content | Springer Science and Business Media LLC | Springer Handbook of Geographic Information | Open Source – GIS | https://doi.org/10.1007/978-3-030-53125-6_30 | Crossref |
GeoServer
| Date | Type | Publisher | Journal | Title | Publication DOI | Source |
|---|---|---|---|---|---|---|
| 2022-06-24 | book_content | Springer Science and Business Media LLC | Springer Handbook of Geographic Information | Open Source – GIS | https://doi.org/10.1007/978-3-030-53125-6_30 | Crossref |
GeoTools
| Date | Type | Publisher | Journal | Title | Publication DOI | Source |
|---|---|---|---|---|---|---|
| 2022-06-24 | book_content | Springer Science and Business Media LLC | Springer Handbook of Geographic Information | Open Source – GIS | https://doi.org/10.1007/978-3-030-53125-6_30 | Crossref |
GMT
| Date | Type | Publisher | Journal | Title | Publication DOI | Source |
|---|---|---|---|---|---|---|
| 2022-06-24 | book_content | Springer Science and Business Media LLC | Springer Handbook of Geographic Information | Open Source – GIS | https://doi.org/10.1007/978-3-030-53125-6_30 | Crossref |
GRASS GIS
| Date | Type | Publisher | Journal | Title | Publication DOI | Source |
|---|---|---|---|---|---|---|
| 2022-08-24 | journal article | ISPRS Foundation | Int. Arch. Photogramm. Remote Sens. Spatial Inf. Sci. | OSGeo, persistent identifiers and the shape of things to come | https://doi.org/10.5194/isprs-archives-XLVIII-4-W1-2022-287-2022 | manual |
| 2022-06-24 | book_content | Springer Science and Business Media LLC | Springer Handbook of Geographic Information | Open Source – GIS | https://doi.org/10.1007/978-3-030-53125-6_30 | Crossref |
| 2022-03-28 | journal article | Copernicus | EGU General Assembly 2022 | The new emerging DOI biotope within and around the Open Source Geospatial Foundation (OSGeo) | https://doi.org/10.5194/egusphere-egu22-5985 | manual |
gvSIG
| Date | Type | Publisher | Journal | Title | Publication DOI | Source |
|---|---|---|---|---|---|---|
| 2022-06-24 | book_content | Springer Science and Business Media LLC | Springer Handbook of Geographic Information | Open Source – GIS | https://doi.org/10.1007/978-3-030-53125-6_30 | Crossref |
Hortonmachine
| Date | Type | Publisher | Journal | Title | Publication DOI | Source |
|---|---|---|---|---|---|---|
| 2022-06-24 | book_content | Springer Science and Business Media LLC | Springer Handbook of Geographic Information | Open Source – GIS | https://doi.org/10.1007/978-3-030-53125-6_30 | Crossref |
MapServer
| Date | Type | Publisher | Journal | Title | Publication DOI | Source |
|---|---|---|---|---|---|---|
| 2022-06-24 | book_content | Springer Science and Business Media LLC | Springer Handbook of Geographic Information | Open Source – GIS | https://doi.org/10.1007/978-3-030-53125-6_30 | Crossref |
MOSS
| Date | Type | Publisher | Journal | Title | Publication DOI | Source |
|---|---|---|---|---|---|---|
| 2022-06-24 | book_content | Springer Science and Business Media LLC | Springer Handbook of Geographic Information | Open Source – GIS | https://doi.org/10.1007/978-3-030-53125-6_30 | Crossref |
| 2022-03-28 | Conference proceedings | Copernicus | EGU General Assembly 2022 | The new emerging DOI biotope within and around the Open Source Geospatial Foundation (OSGeo) | https://doi.org/10.5194/egusphere-egu22-5985 | manual |
| 2022-03-28 | Conference proceedings | Zenodo | FORCE2021 Conference | MOSS: Back to the future | https://doi.org/10.5281/zenodo.5761252 | manual |
| 2022-03-28 | Conference proceedings | Copernicus | EGU General Assembly 2021 | Raiders of the Lost Code: Preserving the MOSS Codebase - Significance, Status, Challenges and Opportunities | https://doi.org/10.5194/egusphere-egu21-5492 | manual |
OSGeoLive
| Date | Type | Publisher | Journal | Title | Publication DOI | Source |
|---|---|---|---|---|---|---|
| 2022-06-24 | book_content | Springer Science and Business Media LLC | Springer Handbook of Geographic Information | Open Source – GIS | https://doi.org/10.1007/978-3-030-53125-6_30 | Crossref |
OSGeoLive Documentation
| Date | Type | Publisher | Journal | Title | Publication DOI | Source |
|---|---|---|---|---|---|---|
| 2022-06-24 | book_content | Springer Science and Business Media LLC | Springer Handbook of Geographic Information | Open Source – GIS | https://doi.org/10.1007/978-3-030-53125-6_30 | Crossref |
PostGIS
| Date | Type | Publisher | Journal | Title | Publication DOI | Source |
|---|---|---|---|---|---|---|
| 2022-06-24 | book_content | Springer Science and Business Media LLC | Springer Handbook of Geographic Information | Open Source – GIS | https://doi.org/10.1007/978-3-030-53125-6_30 | Crossref |
PROJ
| Date | Type | Publisher | Journal | Title | Publication DOI | Source |
|---|---|---|---|---|---|---|
| 2023-09-29 | journal_article | American Geophysical Union (AGU) | Geophysical Research Letters | Use of Shallow Ice Core Measurements to Evaluate and Constrain 1980–1990 Global Reanalyses of Ice Sheet Precipitation Rates | https://doi.org/10.1029/2023GL103943 | Source: Crossref |
| 2023-08-10 | journal_article | Institute of Electrical and Electronics Engineers (IEEE) | IEEE Transactions on Signal and Information Processing over Networks | Multivariate Time Series Forecasting With GARCH Models on Graphs | https://doi.org/10.1109/TSIPN.2023.3304142 | Source: Crossref |
| 2022-11-07 | journal_article | Seismological Society of America (SSA) | Seismological Research Letters | GrowClust3D.jl: A Julia Package for the Relative Relocation of Earthquake Hypocenters Using 3D Velocity Models | https://doi.org/10.1785/0220220193 | Source: Crossref |
| 2022-07-25 | journal_article | MDPI AG | Remote Sensing | An Efficient Global Scale Sentinel-1 Radar Backscatter and Interferometric Processing System | https://doi.org/10.3390/rs14153524 | Source: Crossref |
| 2022-06-24 | book_content | Springer Science and Business Media LLC | Springer Handbook of Geographic Information | Open Source – GIS | https://doi.org/10.1007/978-3-030-53125-6_30 | Source: Crossref |
QGIS
| Date | Type | Publisher | Journal | Title | Publication DOI | Source |
|---|---|---|---|---|---|---|
| 2022-07-19 | journal_article | American Geophysical Union (AGU) | Geochemistry, Geophysics, Geosystems | Development of the Nyika Plateau, Malawi: A Long Lived Paleo‐Surface or a Contemporary Feature of the East African Rift? | https://doi.org/10.1029/2022GC010390 | Source: Crossref |
| 2022-06-24 | book_content | Springer Science and Business Media LLC | Springer Handbook of Geographic Information | Open Source – GIS | https://doi.org/10.1007/978-3-030-53125-6_30 | Crossref |
rasdaman
| Date | Type | Publisher | Journal | Title | Publication DOI | Source |
|---|---|---|---|---|---|---|
| 2022-06-24 | book_content | Springer Science and Business Media LLC | Springer Handbook of Geographic Information | Open Source – GIS | https://doi.org/10.1007/978-3-030-53125-6_30 | Crossref |
SMASH
| Date | Type | Publisher | Journal | Title | Publication DOI | Source |
|---|---|---|---|---|---|---|
| 2022-06-24 | book_content | Springer Science and Business Media LLC | Springer Handbook of Geographic Information | Open Source – GIS | https://doi.org/10.1007/978-3-030-53125-6_30 | Crossref |
Projects considering a DOI
- degree
- (NASA World Wind)
<Add your project here>
This is an incomplete overview over geospatial data sources which can be referenced by DOI. Many more datasets are available in Open Access repositories such as Zenodo
GRASS GIS
- Spearfish Dataset for GRASS GIS v4.x - v8.x https://doi.org/10.5281/zenodo.7930522
- New Orleans Dataset for GRASS GIS https://doi.org/10.5281/zenodo.3359642
- Hilltop Arboretum Landform Dataset for GRASS GIS https://doi.org/10.5281/zenodo.3749397
- Sichuan Dataset for GRASS GIS https://doi.org/10.5281/zenodo.3359645
- The Hills of Governor's Island Dataset for GRASS GIS https://doi.org/10.5281/zenodo.5248688
- Louisiana Dataset for GRASS GIS https://doi.org/10.5281/zenodo.3359620
- Natural Earth Dataset for GRASS GIS https://doi.org/10.5281/zenodo.3968936
- Global Dataset for GRASS GIS https://doi.org/10.5281/zenodo.3359632
- Governor's Island Dataset for GRASS GIS https://doi.org/10.5281/zenodo.5248419
(add datasets here)
QGIS
- Governor's Island Dataset for QGIS https://doi.org/10.5281/zenodo.5701115
- Louisiana Dataset for QGIS https://doi.org/10.5281/zenodo.3359620
(add datasets here)
DOI for OSGeo Video Recordings
- Wiki-page: FOSS4G Video Recordings
- Presentation about OSGeo videos with DOI (2016, german)
- Presentation about OSGeo videos with DOI (2017, german)
- Wiki-page: DOI-based Video Quotes
add your DOI badge to your project pages
- please add your DOI badge to your project
See Example Mapbender
- OSGeo project page for Mapbender https://www.osgeo.org/projects/mapbender/
- Mapbender website https://mapbender.org
- Mapbender Repository README https://github.com/mapbender/mapbender-workshop
You badge looks like this (replace your DOI in the Link and svg name)
<a href="https://doi.org/10.5281/zenodo.5887014"><img src="https://zenodo.org/badge/DOI/10.5281/zenodo.5887014.svg" alt="DOI"></a>
DOI acknowledgement by Publishers and Journals
Not all publishers and scientific journals forward DOI-references in a manner (CrossRef) which can be automatically harvested and reported.
As it is difficult at best for propective authors to be aware prior to a publication wether its (DOI)-refernces will be indexed by CrossRef.
To mitigate this, an incomplete whitelist is being compiled (below) of journals, where CrossRef-indexing of OSGeo-DOI has been confirmed.
Likewise an incomplete greylist lists journals, where OSGeo-DOI have been used in publications, yet still are not indexed by CrossRef.
For scientific authors, the difference between a publication in a whitelist or greylist journal is wether DOI-based references to OSGeo software, -data or -video will be automagically attributed ("due scientific credit") to the respective OSGeo community / persons. For greylist journals, such attribution needs to be compiled manually.
Publisher statements about software citation by DOI
- American Geophysical Union (AGU): Data & Software for Authors
- Springer Nature: Springer Nature announces unified open code policy to better support open research practices
Greenlist: Journals and Publications with confirmed CrossRef-listed software DOI references to OSGeo Projects
| Publisher | Journal / Publication |
|---|---|
| American Geophysical Union (AGU) | Earth and Space Science |
| American Geophysical Union (AGU) | Geochemistry, Geophysics, Geosystems |
| American Geophysical Union (AGU) | GeoHealth |
| American Geophysical Union (AGU) | Geophysical Research Letters |
| Copernicus GmbH | Earth System Science Data |
| Copernicus GmbH | Natural Hazards and Earth System Sciences (EGU) |
| Elsevier BV | Ecological Indicators |
| Geomatik | Geomatik |
| Institute of Electrical and Electronics Engineers (IEEE) | IEEE Transactions on Signal and Information Processing over Networks |
| IOP Publishing | Environmental Research Communications |
| MDPI AG | Agronomy |
| MDPI AG | Remote Sensing |
| MDPI AG | Sensors |
| Seismological Society of America (SSA) | Seismological Research Letters |
| Springer Science and Business Media LLC | Springer Handbook Series |
| Springer Science and Business Media LLC | Springer Scientific Reports (Nature) |
| Springer Science and Business Media LLC | Springer Scientific Data (Nature) |
| Wiley | Crop Science |
Whitelist: Journals and Publications with CrossRef-enabled workflows to acknowledging DOI-based software citations (not yet confirmed)
| Publisher | Journal / Publication |
|---|---|
| American Geophysical Union (AGU) | DOI-based software citations via CrossRef should work for ALL AGU journals: A full references list is provided to CrossRef when an article is published (Sole exception: AGU Radio Science) |
| baz | bas |
- AGU Journals:
Greylist: Journals and Publications reporting DOI references to CrossRef
| Publisher | Journal / Publication |
|---|---|
| Copernicus GmbH | The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences |
Related Identifiers
Research Organisiation Registry (ROR): An ID for the OSGeo Foundation
ROR is a global, community-led registry of open persistent identifiers for research organizations.
OSGeo ROR
The OSGeo Foundation is a research organisation.
The ROR ID for OSGeo is https://ror.org/00cjqbk89
Usage of ROR
Many scholarly communication systems are already using ROR, and many others are working on integrating ROR.
Background Information (ROR Community) =
ORCID (Open Researcher and Contributor ID) - a PID for people
- ORCID FAQ
- ORDID introduction video
- HOWTO: Register an ORCID (Video tutorial)
- How to set up an ORCID account for credit propagation (e.g. Version-DOI of OSGeo project software releases will automagically appear in the "works" section of the associated ORCID accounts)
Authentice an ORCID account with a GitHub
„We’re excited to announce that GitHub is partnering with ORCID. You can now authenticate your ORCID account with your GitHub account, and display your ORCID iD on your public GitHub profile. ORCID provides a persistent unique digital identifier (an ORCID iD) that researchers own and control, and that distinguishes them from every other researcher."
https://github.blog/changelog/2024-03-13-authenticate-orcid-id/
How to include ORCIDs to a LaTEX/Overleaf document
Include these packages: \usepackage{orcidlink} \usepackage[hidelinks]{hyperref}
\author{ Peter Löwe\,\orcidlink{0000-0003-2257-0517}~\textsuperscript{1}\thanks{Corresponding author}, Markus Neteler\,\orcidlink{0000-0003-1916-1966}~\textsuperscript{2} } (Source: OSGEO, PERSISTENT IDENTIFIERS AND THE SHAPE OF THINGS TO COME)